Factsheet for PGSC0003DMT400023711

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g123430.2.1	Tomato	nucleus	94.91	50.88
PGSC0003DMT400035808	Potato	nucleus, plastid	17.82	32.03
PGSC0003DMT400055211	Potato	nucleus	23.27	17.73
Zm00001d037511_P001	Maize	nucleus	10.91	15.15
PGSC0003DMT400016585	Potato	nucleus	15.64	9.05
PGSC0003DMT400065501	Potato	nucleus	16.36	8.91
PGSC0003DMT400010231	Potato	nucleus	15.64	8.38
PGSC0003DMT400071732	Potato	nucleus	13.82	8.32
PGSC0003DMT400065313	Potato	nucleus	14.18	7.82
PGSC0003DMT400031401	Potato	nucleus	10.91	7.37
PGSC0003DMT400028706	Potato	nucleus	11.64	7.19
PGSC0003DMT400023709	Potato	nucleus	2.91	3.74
CDY71682	Canola	nucleus	1.09	1.45
VIT_04s0023g00970.t01	Wine grape	nucleus	0.36	0.85
PGSC0003DMT400074397	Potato	nucleus	0.36	0.52
PGSC0003DMT400036707	Potato	nucleus	0.36	0.43
PGSC0003DMT400016881	Potato	nucleus	0.36	0.39
KXG24410	Sorghum	mitochondrion	0.0	0.0
HORVU2Hr1G063070.1	Barley	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400023711	EnsemblPlantsGene:PGSC0003DMG402009171	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:AP2-like_transcript_factor
ncoils:Coil	PANTHER:PTHR32467	PANTHER:PTHR32467:SF72	PGSC:PGSC0003DMG402009171	SEG:seg	UniParc:UPI000296B337
UniProt:M1AIV1	MapMan:35.1	:	:	:	:

Description

AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG402009171]

Coordinates

chr3:-:61526463..61527637

Molecular Weight (calculated)

30985.9 Da

IEP (calculated)

5.068

GRAVY (calculated)

-0.822

Length

275 amino acids

Sequence
(BLAST)

001: MSNWLGFSLT PDFRIDDDDE EEVKNYERRN EAAENTPLSV MPLSSNGSLC MMDPFPRCEP TEDCWRYENH EMSTANNPEE EGPKLEDFLG CCYSNSLPNE
101: EQQIAEINVN IPPSINQSDH EQHQLEIGAN MKLIPSPQMM IQNSQFQSSH HEFVNSTDSV YHLPFDGATS VSGFKSWLRQ ASAAAPLMSS AEEIVNPSNC
201: QALSLAAAPK KRPVAVKNVS GSKESVPRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK GRQGV

Best Arabidopsis Sequence Match ( AT1G72570.1 )
(BLAST)

001: MKKWLGFSLT PPLRICNSEE EELRHDGSDV WRYDINFDHH HHDEDVPKVE DLLSNSHQTE YPINHNQTNV NCTTVVNRLN PPGYLLHDQT VVTPHYPNLD
101: PNLSNDYGGF ERVGSVSVFK SWLEQGTPAF PLSSHYVTEE AGTSNNISHF SNEETGYNTN GSMLSLALSH GACSDLINES NVSARVEEPV KVDEKRKRLV
201: VKPQVKESVP RKSVDSYGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRRGRQVYLG GYDEEEKAAR AYDLAALKYW GPTTHLNFPL SNYEKEIEEL
301: NNMNRQEFVA MLRRNSSGFS RGASVYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDINRYDVK RICSSSTIVD
401: SDQAKHSPTS SGAGH

Arabidopsis Description

AIL1AP2-like ethylene-responsive transcription factor AIL1 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFE1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.