Factsheet for PGSC0003DMT400036707

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074397	Potato	nucleus	57.83	69.27
GSMUA_Achr6P30870_001	Banana	nucleus	43.91	34.24
PGSC0003DMT400023709	Potato	nucleus	22.17	23.83
PGSC0003DMT400016881	Potato	nucleus	26.52	23.83
PGSC0003DMT400071732	Potato	nucleus	29.57	14.88
PGSC0003DMT400028706	Potato	nucleus	26.96	13.93
PGSC0003DMT400016585	Potato	nucleus	27.39	13.26
PGSC0003DMT400010231	Potato	nucleus	29.13	13.06
Solyc02g030210.2.1	Tomato	nucleus	19.57	12.82
PGSC0003DMT400065313	Potato	nucleus	27.39	12.63
PGSC0003DMT400065501	Potato	nucleus	27.39	12.48
PGSC0003DMT400031401	Potato	nucleus	20.87	11.79
VIT_08s0007g08580.t01	Wine grape	nucleus	20.87	11.27
Os05t0389000-02	Rice	nucleus	20.43	11.06
TraesCS1A01G242800.1	Wheat	nucleus	20.0	11.0
TraesCS1D01G242800.1	Wheat	nucleus	20.0	10.9
EES19464	Sorghum	nucleus	19.57	10.82
TraesCS1B01G254300.1	Wheat	nucleus	19.57	10.66
KRH66909	Soybean	nucleus	19.57	10.64
KRG95240	Soybean	nucleus	19.13	10.53
CDY35402	Canola	nucleus	18.26	10.22
Bra004641.1-P	Field mustard	nucleus	18.26	10.14
CDY23833	Canola	nucleus	17.83	9.65
CDY22537	Canola	nucleus	17.83	9.58
HORVU1Hr1G056500.15	Barley	nucleus, plastid	18.7	9.56
CDX79921	Canola	nucleus	17.83	9.51
KRH72011	Soybean	nucleus	18.26	9.4
Bra000237.1-P	Field mustard	nucleus	18.7	9.29
AT2G41710.4	Thale cress	nucleus	17.83	8.93
Zm00001d038087_P003	Maize	mitochondrion	18.7	8.9
HORVU3Hr1G004480.38	Barley	nucleus, plastid	3.91	3.2
PGSC0003DMT400055211	Potato	nucleus	0.87	0.55
PGSC0003DMT400023711	Potato	nucleus	0.43	0.36
PGSC0003DMT400035808	Potato	nucleus, plastid	0.0	0.0

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:M1B436	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400014157	PGSC:PGSC0003DMG400014157	EnsemblPlants:PGSC0003DMT400036707
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF68	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295ED47
SEG:seg	:	:	:	:	:

Description

AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400014157]

Coordinates

chr3:+:57370351..57374972

Molecular Weight (calculated)

25879.1 Da

IEP (calculated)

4.980

GRAVY (calculated)

-0.681

Length

230 amino acids

Sequence
(BLAST)

001: MEGQSKEEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ EEAATAYDMA AIEYRGLNAV TNFDLSRYIK WLRPSDQTNN
101: NTINNPEPNP NPNPNDIHLM PTNLTQQQSS GCDVTVAALP HPGGGAATSS AALEILLQST KFKEMLERTS EVIECPETPP EPDRPRRSFP DDIQTYFDCQ
201: ESSSFIEEHD IIFGDLDSLT LPMFQCELIN

Best Arabidopsis Sequence Match ( AT1G16060.5 )
(BLAST)

001: MESQSKEEYI GSLRRKSSGF SRGVSKYRGV AKHHHNGRWE ARIGRVFGNK YLYLGTYATQ EEAAIAYDIA AIEYRGLNAV TNFDISRYLK LPVPENPIDT
101: ANNLLESPHS DLSPFIKPNH ESDLSQSQSS SEDNDDRKTK LLKSSPLVAE EVIGPSTPPE IAPPRRSFPE DIQTYFGCQN SGKLTAEEDD VIFGDLDSFL
201: TPDFYSELND C

Arabidopsis Description

ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.