Factsheet for PGSC0003DMT400016585

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g044300.2.1	Tomato	nucleus	76.21	90.27
PGSC0003DMT400010231	Potato	nucleus	68.42	63.35
CDX69282	Canola	nucleus	48.0	57.0
TraesCS2A01G514200.1	Wheat	nucleus	43.58	56.1
PGSC0003DMT400065501	Potato	nucleus	59.58	56.04
Bra011741.1-P	Field mustard	nucleus	50.53	55.43
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	41.68	54.7
AT4G36920.1	Thale cress	nucleus	49.68	54.63
CDY62228	Canola	nucleus	49.05	54.06
CDY29538	Canola	nucleus	49.05	53.94
CDY71179	Canola	nucleus	25.68	53.74
Bra017809.1-P	Field mustard	nucleus	48.84	53.7
CDY71282	Canola	nucleus	26.32	53.65
Os04t0649100-03	Rice	nucleus	46.53	48.04
Zm00001d026448_P001	Maize	nucleus	39.79	45.76
TraesCS2D01G515800.1	Wheat	nucleus	45.26	44.24
TraesCS2B01G542400.2	Wheat	nucleus	45.05	44.21
PGSC0003DMT400071732	Potato	nucleus	40.21	41.79
PGSC0003DMT400065313	Potato	nucleus	43.37	41.28
OQU82446	Sorghum	endoplasmic reticulum, vacuole	34.32	41.16
PGSC0003DMT400031401	Potato	nucleus	34.95	40.79
Zm00001d002075_P001	Maize	nucleus	45.68	40.71
PGSC0003DMT400028706	Potato	nucleus	37.05	39.55
PGSC0003DMT400016881	Potato	nucleus	21.05	39.06
PGSC0003DMT400074397	Potato	nucleus	11.58	28.65
PGSC0003DMT400036707	Potato	nucleus	13.26	27.39
PGSC0003DMT400023709	Potato	nucleus	10.95	24.3
PGSC0003DMT400023711	Potato	nucleus	9.05	15.64
PGSC0003DMT400035808	Potato	nucleus, plastid	4.84	15.03
PGSC0003DMT400055211	Potato	nucleus	6.53	8.59

Protein Annotations

EntrezGene:102582479	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M1A7W5	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400006482	PGSC:PGSC0003DMG400006482
EnsemblPlants:PGSC0003DMT400016585	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF18	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000294EDD5	RefSeq:XP_006343193.1	SEG:seg	:	:

Description

APETALA2 [Source:PGSC_GENE;Acc:PGSC0003DMG400006482]

Coordinates

chr3:+:7984914..7989565

Molecular Weight (calculated)

53306.3 Da

IEP (calculated)

6.653

GRAVY (calculated)

-0.872

Length

475 amino acids

Sequence
(BLAST)

001: MWNLNDSPDQ IMEDESDEGI PVRSVSNSSS SAVLVAEDGN SSEEDGERGK KKKSSTPGKL FGFSVNDDNL EPPIVTRQFF PVDNESTNFP RAQWAGIKFC
101: ESEPPLVTGL VGNPIEVSQQ QPIKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGAEADIN FTLEDYEGDL
201: KQMSNLTKEE FVHVLRRQST GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EVEAARSYDK AAIKCNGKDA VTNFDPSIYE NEVNSTECSD
301: NAADHNLDLS LGGSSQEMGD NRGQNSSSNL QLDVHWGHQG SSRLNKPRSQ INFDGQKRSG YNETETLQLL SQTHLNSSGR VQPNINEMQK FGEFIRDGET
401: HMVQAYPRQF NSYQVQTSSN NNVGQIGATS NSQEWHPNYE IITTAAASSG FPQQIIRTQN WSQNNGFHHN FMRPS

Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.