Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71282 | Canola | nucleus | 97.8 | 95.28 |
| Bra011741.1-P | Field mustard | nucleus | 98.24 | 51.5 |
| CDX69282 | Canola | nucleus | 85.9 | 48.75 |
| CDY29538 | Canola | nucleus | 91.19 | 47.92 |
| AT4G36920.1 | Thale cress | nucleus | 90.31 | 47.45 |
| CDY62228 | Canola | nucleus | 88.99 | 46.87 |
| TraesCS2A01G514200.1 | Wheat | nucleus | 49.34 | 30.35 |
| CDY12814 | Canola | nucleus | 46.7 | 29.36 |
| CDY01432 | Canola | nucleus | 46.26 | 29.17 |
| Solyc02g093150.2.1 | Tomato | nucleus | 57.27 | 29.15 |
| OQU82446 | Sorghum | endoplasmic reticulum, vacuole | 50.22 | 28.79 |
| Solyc03g044300.2.1 | Tomato | nucleus | 50.66 | 28.68 |
| GSMUA_Achr8P18550_001 | Banana | endoplasmic reticulum, nucleus | 45.37 | 28.45 |
| Zm00001d026448_P001 | Maize | nucleus | 48.46 | 26.63 |
| KRH28441 | Soybean | nucleus | 56.83 | 26.01 |
| PGSC0003DMT400010231 | Potato | nucleus | 58.15 | 25.73 |
| PGSC0003DMT400016585 | Potato | nucleus | 53.74 | 25.68 |
| VIT_07s0031g00220.t01 | Wine grape | nucleus | 56.83 | 25.44 |
| Os04t0649100-03 | Rice | nucleus | 51.54 | 25.43 |
| Solyc02g064960.2.1 | Tomato | nucleus | 55.51 | 25.0 |
| TraesCS2B01G542400.2 | Wheat | nucleus | 51.98 | 24.38 |
| TraesCS2D01G515800.1 | Wheat | nucleus | 51.98 | 24.28 |
| PGSC0003DMT400065501 | Potato | nucleus | 53.3 | 23.96 |
| CDY15760 | Canola | nucleus | 45.37 | 22.69 |
| CDY04573 | Canola | nucleus | 45.37 | 22.69 |
| Zm00001d002075_P001 | Maize | nucleus | 51.98 | 22.14 |
| CDX95767 | Canola | nucleus | 35.24 | 19.18 |
| CDX83296 | Canola | nucleus | 35.68 | 18.58 |
| CDY68119 | Canola | nucleus | 24.23 | 16.04 |
| CDX73419 | Canola | nucleus | 24.23 | 15.99 |
| CDY07510 | Canola | nucleus | 22.91 | 15.85 |
| CDY71682 | Canola | nucleus | 14.1 | 15.46 |
| CDY19560 | Canola | nucleus | 6.61 | 14.56 |
| CDY31576 | Canola | nucleus | 28.63 | 14.38 |
| CDX80199 | Canola | nucleus | 28.19 | 14.1 |
| CDY09223 | Canola | nucleus | 25.55 | 13.46 |
| CDY22537 | Canola | nucleus | 17.62 | 9.35 |
| CDY35402 | Canola | nucleus | 16.3 | 9.0 |
| CDY23833 | Canola | nucleus | 16.74 | 8.94 |
| CDX79921 | Canola | nucleus | 16.74 | 8.82 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078JWQ4 | UniProt:A0A078JWQ4 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY71179 | ProteinID:CDY71179 | ProteinID:CDY71179.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00011935001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF18 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EE8035 | SEG:seg | : | : |
Description
BnaCnng71740DBnaCnng71740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JWQ4]
Coordinates
chrLK044808:-:1444..2725
Molecular Weight (calculated)
25017.1 Da
IEP (calculated)
8.271
GRAVY (calculated)
-0.702
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEV EAARAYDKAA IKCNGKDAVT NFDPSIYDDE LNAESSGNSI
101: QQDHNLDLSL GNSVNSKQKG QDMRLKMNQQ ETLHPNEILG LGQTGMVNHI PNSNLQFPGS SNIGGGGGFS LFPVAENHRF DGRTTTNQVL ANAAASSGFS
201: PHHHNQIFNS TSTSHQNWLQ TNGFQPS
101: QQDHNLDLSL GNSVNSKQKG QDMRLKMNQQ ETLHPNEILG LGQTGMVNHI PNSNLQFPGS SNIGGGGGFS LFPVAENHRF DGRTTTNQVL ANAAASSGFS
201: PHHHNQIFNS TSTSHQNWLQ TNGFQPS
001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS
Arabidopsis Description
AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.