Factsheet for PGSC0003DMT400010231

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093150.2.1	Tomato	nucleus	83.24	95.74
PGSC0003DMT400016585	Potato	nucleus	63.35	68.42
VIT_07s0031g00220.t01	Wine grape	nucleus	65.3	66.08
KRH77030	Soybean	nucleus	59.84	61.16
CDX69282	Canola	nucleus	47.37	60.75
Bra011741.1-P	Field mustard	nucleus	50.29	59.58
TraesCS2A01G514200.1	Wheat	nucleus	42.3	58.81
KRH04560	Soybean	nucleus	60.82	58.65
CDY71179	Canola	nucleus	25.73	58.15
AT4G36920.1	Thale cress	nucleus	48.93	58.1
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	40.94	58.01
KRH57898	Soybean	nucleus	60.23	57.97
CDY71282	Canola	nucleus	26.32	57.94
PGSC0003DMT400065501	Potato	nucleus	56.92	57.82
CDY29538	Canola	nucleus	48.54	57.64
CDY62228	Canola	nucleus	48.34	57.54
Bra017809.1-P	Field mustard	nucleus	48.34	57.41
Os04t0649100-03	Rice	nucleus	46.2	51.52
Zm00001d026448_P001	Maize	nucleus	40.74	50.61
TraesCS2B01G542400.2	Wheat	nucleus	44.83	47.52
TraesCS2D01G515800.1	Wheat	nucleus	44.83	47.33
OQU82446	Sorghum	endoplasmic reticulum, vacuole	35.67	46.21
Zm00001d002075_P001	Maize	nucleus	46.2	44.47
PGSC0003DMT400065313	Potato	nucleus	42.5	43.69
PGSC0003DMT400071732	Potato	nucleus	38.79	43.54
PGSC0003DMT400028706	Potato	nucleus	36.26	41.8
PGSC0003DMT400031401	Potato	nucleus	32.94	41.52
PGSC0003DMT400016881	Potato	nucleus	20.27	40.62
PGSC0003DMT400074397	Potato	nucleus	11.5	30.73
PGSC0003DMT400036707	Potato	nucleus	13.06	29.13
PGSC0003DMT400023709	Potato	nucleus	10.72	25.7
PGSC0003DMT400023711	Potato	nucleus	8.38	15.64
PGSC0003DMT400035808	Potato	nucleus, plastid	4.48	15.03
PGSC0003DMT400055211	Potato	nucleus	7.21	10.25

Protein Annotations

EntrezGene:102582568	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0ZXQ1	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400004006	PGSC:PGSC0003DMG400004006
EnsemblPlants:PGSC0003DMT400010231	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF18	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000294A998	RefSeq:XP_006339870.1	SEG:seg	:	:

Description

PHAP2A protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004006]

Coordinates

chr2:+:43486660..43489836

Molecular Weight (calculated)

57014.9 Da

IEP (calculated)

7.000

GRAVY (calculated)

-0.815

Length

513 amino acids

Sequence
(BLAST)

001: MWDLNESEEG CSTPIEFECD DEKGKRVGSV SNSSSSAVAV DDISEEELDG ERGKKKRGTP PSKIFGFSMV GPGNGDEEQP VTRQFFPVDE SEMGGVAAAE
101: NGSPNFPRAH WVGVKFYQTE TLGNTGLAKP VDMVQQQQQQ PIKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK
201: FRGVEADINF SLEDYESDLK QMTSLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE IEAARAYDKA AIKCNGKDAV
301: TNFDPSIYED ELNSIESSDN AADHNLDLSL GGSSSKQGSR ELGDNRGQNS SSMQLDIDWQ RHGLRPEKQS SALIDARRRE NGYNETETLQ LLSQTHLHSP
401: VSLKHNNSQV QRFSQFMRPG DQSHMIQMFP PQFGSSNYQI QFPSGSNGGR IGGTNVGDLS LAATSNGSSQ WQSNFPPQIF AAAAASSGFP QQIVRPQNWS
501: SENGFHHSLR RPS

Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.