Factsheet for PGSC0003DMT400023709

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g00970.t01	Wine grape	nucleus	23.36	42.73
Solyc03g123430.2.1	Tomato	nucleus	94.86	39.57
KXG24410	Sorghum	mitochondrion	12.62	32.93
PGSC0003DMT400074397	Potato	nucleus	21.5	23.96
PGSC0003DMT400036707	Potato	nucleus	23.83	22.17
HORVU2Hr1G063070.1	Barley	nucleus	8.88	19.39
PGSC0003DMT400016881	Potato	nucleus	20.56	17.19
Zm00001d037511_P001	Maize	nucleus	10.75	11.62
PGSC0003DMT400016585	Potato	nucleus	24.3	10.95
PGSC0003DMT400071732	Potato	nucleus	22.9	10.72
PGSC0003DMT400010231	Potato	nucleus	25.7	10.72
CDY71682	Canola	nucleus	10.28	10.63
PGSC0003DMT400065501	Potato	nucleus	24.77	10.49
PGSC0003DMT400028706	Potato	nucleus	21.5	10.34
PGSC0003DMT400065313	Potato	nucleus	23.83	10.22
PGSC0003DMT400031401	Potato	nucleus	15.89	8.35
PGSC0003DMT400035808	Potato	nucleus, plastid	2.8	3.92
PGSC0003DMT400023711	Potato	nucleus	3.74	2.91
PGSC0003DMT400055211	Potato	nucleus	2.8	1.66

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M1AIV0	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG401009171	PGSC:PGSC0003DMG401009171
EnsemblPlants:PGSC0003DMT400023709	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF47
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000296AB96	SEG:seg	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401009171]

Coordinates

chr3:-:61523155..61526150

Molecular Weight (calculated)

23230.9 Da

IEP (calculated)

6.345

GRAVY (calculated)

-0.503

Length

214 amino acids

Sequence
(BLAST)

001: MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTSAVTNFDI SRYDVKRICS SSTLIAGDLA KRSSSKDSVV CPSSYEDYSS
101: CTTSPRPILA ITNGEQLQQP VDSFMDMVPL MGAAGSSSRS SSNAPSPKCP GSGEMSCDFG VGLEYPQAYY SSVQVQDHKF EDGSKGNDDN SSSSGRIGNM
201: DLVHPVPMFA LWNQ

Best Arabidopsis Sequence Match ( AT1G72570.1 )
(BLAST)

001: MKKWLGFSLT PPLRICNSEE EELRHDGSDV WRYDINFDHH HHDEDVPKVE DLLSNSHQTE YPINHNQTNV NCTTVVNRLN PPGYLLHDQT VVTPHYPNLD
101: PNLSNDYGGF ERVGSVSVFK SWLEQGTPAF PLSSHYVTEE AGTSNNISHF SNEETGYNTN GSMLSLALSH GACSDLINES NVSARVEEPV KVDEKRKRLV
201: VKPQVKESVP RKSVDSYGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRRGRQVYLG GYDEEEKAAR AYDLAALKYW GPTTHLNFPL SNYEKEIEEL
301: NNMNRQEFVA MLRRNSSGFS RGASVYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDINRYDVK RICSSSTIVD
401: SDQAKHSPTS SGAGH

Arabidopsis Description

AIL1AP2-like ethylene-responsive transcription factor AIL1 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFE1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.