Factsheet for PGSC0003DMT400074397

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036707	Potato	nucleus	69.27	57.83
GSMUA_Achr6P30870_001	Banana	nucleus	50.0	32.54
PGSC0003DMT400016881	Potato	nucleus	29.17	21.88
PGSC0003DMT400023709	Potato	nucleus	23.96	21.5
PGSC0003DMT400028706	Potato	nucleus	30.21	13.03
PGSC0003DMT400071732	Potato	nucleus	30.73	12.91
Solyc02g030210.2.1	Tomato	nucleus	21.35	11.68
PGSC0003DMT400065313	Potato	nucleus	30.21	11.62
PGSC0003DMT400016585	Potato	nucleus	28.65	11.58
PGSC0003DMT400010231	Potato	nucleus	30.73	11.5
PGSC0003DMT400065501	Potato	nucleus	28.65	10.89
PGSC0003DMT400031401	Potato	nucleus	22.4	10.57
CDY35402	Canola	nucleus	21.35	9.98
VIT_08s0007g08580.t01	Wine grape	nucleus	21.88	9.86
TraesCS1A01G242800.1	Wheat	nucleus	21.35	9.81
Bra004641.1-P	Field mustard	nucleus	20.83	9.66
CDY22537	Canola	nucleus	21.35	9.58
TraesCS1B01G254300.1	Wheat	nucleus	20.83	9.48
TraesCS1D01G242800.1	Wheat	nucleus	20.83	9.48
Os05t0389000-02	Rice	nucleus	20.83	9.41
KRG95240	Soybean	nucleus	20.31	9.33
CDX79921	Canola	nucleus	20.83	9.28
KRH66909	Soybean	nucleus	20.31	9.22
CDY23833	Canola	nucleus	20.31	9.18
KRH72011	Soybean	nucleus	20.83	8.95
EES19464	Sorghum	nucleus	19.27	8.89
Bra000237.1-P	Field mustard	nucleus	21.35	8.86
HORVU1Hr1G056500.15	Barley	nucleus, plastid	20.31	8.67
AT2G41710.4	Thale cress	nucleus	20.31	8.5
Zm00001d038087_P003	Maize	mitochondrion	18.75	7.45
HORVU3Hr1G004480.38	Barley	nucleus, plastid	4.17	2.85
PGSC0003DMT400055211	Potato	nucleus	1.04	0.55
PGSC0003DMT400023711	Potato	nucleus	0.52	0.36
PGSC0003DMT400035808	Potato	nucleus, plastid	0.0	0.0

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M1CTM6	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400028913	PGSC:PGSC0003DMG400028913
EnsemblPlants:PGSC0003DMT400074397	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF20
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000296A265	SEG:seg	:	:

Description

AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400028913]

Coordinates

chr6:+:50243729..50246761

Molecular Weight (calculated)

21957.3 Da

IEP (calculated)

4.573

GRAVY (calculated)

-0.751

Length

192 amino acids

Sequence
(BLAST)

001: MESQSREEYI GSLRRKSSGF SRGVSRYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYASE EEAAMAYDMA AIQYRGPNAV TNFDISRYNN CSGPNPNDMN
101: PMPSTKEEKA SSVVDCPETP PEVEKSRRST TFPDDIQTYF DCQDSSSTFM EDSHIIFGDL ESFVLPMMFE CHQLEEFLSF SPYSELELET SD

Best Arabidopsis Sequence Match ( AT1G16060.3 )
(BLAST)

001: MFFFLVLLTM LTGIMADSSR AVYLGAYDEE DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN
101: GRWEARIGRV FGNKYLYLGT YATQEEAAIA YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD
201: RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC

Arabidopsis Description

ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.