Factsheet for TraesCS1B01G254300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G242800.1	Wheat	nucleus	97.87	98.8
TraesCS1D01G242800.1	Wheat	nucleus	98.58	98.58
HORVU1Hr1G056500.15	Barley	nucleus, plastid	97.16	91.11
EES19464	Sorghum	nucleus	81.28	82.45
Os05t0389000-02	Rice	nucleus	80.57	80.0
GSMUA_AchrUn_...	Banana	nucleus	48.58	59.59
Zm00001d038087_P003	Maize	mitochondrion	67.77	59.21
VIT_08s0007g08580.t01	Wine grape	nucleus	49.29	48.83
Bra004641.1-P	Field mustard	nucleus	47.39	48.31
CDY35402	Canola	nucleus	46.45	47.69
KRG95240	Soybean	nucleus	47.16	47.61
Solyc02g030210.2.1	Tomato	nucleus	39.57	47.58
CDY22537	Canola	nucleus	47.87	47.2
KRH66909	Soybean	nucleus	47.16	47.04
CDY23833	Canola	nucleus	46.68	46.35
CDX79921	Canola	nucleus	46.68	45.71
Bra000237.1-P	Field mustard	nucleus	48.34	44.06
AT2G41710.4	Thale cress	nucleus	47.87	44.01
KRH72011	Soybean	nucleus	43.84	41.39
TraesCS6B01G334700.1	Wheat	nucleus	20.38	22.93
TraesCS7B01G186900.1	Wheat	nucleus	18.96	22.66
PGSC0003DMT400074397	Potato	nucleus	9.48	20.83
TraesCS7B01G440400.1	Wheat	nucleus	19.43	20.25
PGSC0003DMT400036707	Potato	nucleus	10.66	19.57
TraesCS2B01G542400.2	Wheat	nucleus	21.8	19.01
TraesCS1B01G076300.1	Wheat	nucleus	22.27	18.36
TraesCS5B01G486900.1	Wheat	nucleus	9.95	16.09

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF32	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1B01G254300	EnsemblPlants:TraesCS1B01G254300.1	SEG:seg

Description

No Description!

Coordinates

chr1B:+:448525766..448531077

Molecular Weight (calculated)

46264.5 Da

IEP (calculated)

9.409

GRAVY (calculated)

-0.544

Length

422 amino acids

Sequence
(BLAST)

001: MASPNPAAAD ASGLQKKLEA AAGGSEGPPP AYGAAVGVAV AEQAPPRRLA PARKERVCTA KDRISRMTPC AAGKRSSIYR GVTRHRWTGR YEAHLWDKST
101: WNQNQNKKGK QVYLGAYDDE EAAARAYDLA ALKYWGAGTQ INFPVSDYTR DVEEMQMISK EDYLVSLRRK SSAFSRGLPK YRGLPRQLHN SRWDASLGQL
201: LGNDYMNLSC GKGIALDGKF AGSFGLERKI DLTNYIRWWV PKKTRQSDTS KAEEVADEIR AIEGSVQLTE PYKLPSLGLG SHSNPSSAGL SACSILSQSG
301: AFKSFLEKST KLSEECTFSK EIDEGKVVVS VPTTGHHTSP VDINMNGLLV QRAPYTLAPV MPTPMKSTWS PADPSADHLF WSNFILPSSQ PVTMATITTT
401: TFAKNEVSSS DPFKNQEYEH TK

Best Arabidopsis Sequence Match ( AT2G41710.1 )
(BLAST)

001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.