Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35402 | Canola | nucleus | 90.89 | 94.65 |
| Bra000237.1-P | Field mustard | nucleus | 94.16 | 87.04 |
| CDY23833 | Canola | nucleus | 85.28 | 85.88 |
| CDX79921 | Canola | nucleus | 85.28 | 84.69 |
| AT2G41710.4 | Thale cress | nucleus | 84.11 | 78.43 |
| VIT_08s0007g08580.t01 | Wine grape | nucleus | 66.36 | 66.67 |
| KRG95240 | Soybean | nucleus | 61.68 | 63.16 |
| KRH66909 | Soybean | nucleus | 61.68 | 62.41 |
| Solyc02g030210.2.1 | Tomato | nucleus | 48.6 | 59.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.63 | 55.52 |
| KRH72011 | Soybean | nucleus | 56.78 | 54.36 |
| Os05t0389000-02 | Rice | nucleus | 47.9 | 48.24 |
| TraesCS1A01G242800.1 | Wheat | nucleus | 46.96 | 48.09 |
| EES19464 | Sorghum | nucleus | 46.73 | 48.08 |
| TraesCS1D01G242800.1 | Wheat | nucleus | 47.2 | 47.87 |
| TraesCS1B01G254300.1 | Wheat | nucleus | 47.2 | 47.87 |
| HORVU1Hr1G056500.15 | Barley | nucleus, plastid | 46.73 | 44.44 |
| Zm00001d038087_P003 | Maize | mitochondrion | 34.58 | 30.64 |
| CDY71682 | Canola | nucleus | 12.85 | 26.57 |
| CDX73419 | Canola | nucleus | 18.93 | 23.55 |
| CDY68119 | Canola | nucleus | 18.69 | 23.32 |
| CDY01432 | Canola | nucleus | 19.39 | 23.06 |
| CDY12814 | Canola | nucleus | 19.39 | 22.99 |
| CDY07510 | Canola | nucleus | 17.29 | 22.56 |
| CDX69282 | Canola | nucleus | 20.79 | 22.25 |
| PGSC0003DMT400074397 | Potato | nucleus | 9.58 | 21.35 |
| CDX83296 | Canola | nucleus | 21.73 | 21.33 |
| CDY04573 | Canola | nucleus | 22.43 | 21.15 |
| CDY62228 | Canola | nucleus | 21.26 | 21.11 |
| CDY29538 | Canola | nucleus | 21.26 | 21.06 |
| CDY15760 | Canola | nucleus | 22.2 | 20.93 |
| CDX95767 | Canola | nucleus | 20.33 | 20.86 |
| CDY09223 | Canola | nucleus | 19.86 | 19.72 |
| CDY31576 | Canola | nucleus | 20.09 | 19.03 |
| CDX80199 | Canola | nucleus | 19.86 | 18.72 |
| PGSC0003DMT400036707 | Potato | nucleus | 9.58 | 17.83 |
| CDY71179 | Canola | nucleus | 9.35 | 17.62 |
| CDY71282 | Canola | nucleus | 9.35 | 17.17 |
| CDY19560 | Canola | nucleus | 1.87 | 7.77 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078GBY0 | UniProt:A0A078GBY0 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY22537 | ProteinID:CDY22537 | ProteinID:CDY22537.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00019128001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF32 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EF4848 | SEG:seg | : | : |
Description
BnaC03g23470DBnaC03g23470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBY0]
Coordinates
chrLK032132:-:485463..488207
Molecular Weight (calculated)
46991.8 Da
IEP (calculated)
9.054
GRAVY (calculated)
-0.774
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMSSPDQG PKTEAGGGGG ESSENVSASD QMLLYRSFKK AKKERGCTAK ERISKMPPCT AGKRSSIYRG VTRHRWTGRY EAHLWDKSTW NQNQNKKGKQ
101: VYLGAYDDEE AAARAYDLAA LKYWGPGTLI NFPVTDYSRD LEEMQSLSRE EYLATLRRKS SGFSRGIAKY RGLQSRWEAS ASRMPGPEYF GNLHYGDERG
201: AEGDFLGSFC LERKIDLTGY VKWWGVNKPR QPESSSKASE DAKVEDAGTE LKTLEHASQA TEPYKAPNFG VHHGTQRKGK QITSPSSTSS ALSILSASPA
301: YKSLEEKVMK IQESSSTREN DENANRNINS TEKSHGKEIE KPPVVSHGVS LGSGGGVAPA AAALSLQKSM YPLASLLTAP LLSNYNTLDP LGEPILWTPF
401: LPPGSSHTLE VTKTETSCST YSYLPQEK
101: VYLGAYDDEE AAARAYDLAA LKYWGPGTLI NFPVTDYSRD LEEMQSLSRE EYLATLRRKS SGFSRGIAKY RGLQSRWEAS ASRMPGPEYF GNLHYGDERG
201: AEGDFLGSFC LERKIDLTGY VKWWGVNKPR QPESSSKASE DAKVEDAGTE LKTLEHASQA TEPYKAPNFG VHHGTQRKGK QITSPSSTSS ALSILSASPA
301: YKSLEEKVMK IQESSSTREN DENANRNINS TEKSHGKEIE KPPVVSHGVS LGSGGGVAPA AAALSLQKSM YPLASLLTAP LLSNYNTLDP LGEPILWTPF
401: LPPGSSHTLE VTKTETSCST YSYLPQEK
001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.