Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19560 | Canola | nucleus | 22.69 | 100.0 |
| Bra011939.1-P | Field mustard | nucleus | 97.58 | 97.58 |
| CDY04573 | Canola | nucleus | 97.58 | 97.58 |
| CDX95767 | Canola | nucleus | 77.53 | 84.41 |
| AT2G28550.3 | Thale cress | nucleus | 85.9 | 84.05 |
| CDX83296 | Canola | nucleus | 77.09 | 80.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.93 | 58.12 |
| GSMUA_Achr8P01980_001 | Banana | nucleus | 40.97 | 50.27 |
| CDY12814 | Canola | nucleus | 39.43 | 49.58 |
| KRH22956 | Soybean | nucleus | 51.98 | 49.58 |
| CDY01432 | Canola | nucleus | 38.99 | 49.17 |
| CDX69282 | Canola | nucleus | 42.29 | 48.0 |
| GSMUA_Achr10P... | Banana | nucleus | 46.7 | 47.96 |
| KRH10362 | Soybean | nucleus | 50.88 | 47.63 |
| PGSC0003DMT400071732 | Potato | nucleus | 47.8 | 47.48 |
| GSMUA_Achr9P03060_001 | Banana | nucleus | 45.15 | 47.34 |
| GSMUA_Achr6P33140_001 | Banana | nucleus | 49.12 | 46.75 |
| CDY62228 | Canola | nucleus | 44.05 | 46.4 |
| PGSC0003DMT400028706 | Potato | nucleus | 45.15 | 46.07 |
| Solyc09g007260.2.1 | Tomato | nucleus | 46.04 | 45.93 |
| Solyc10g084340.1.1 | Tomato | nucleus | 46.7 | 45.89 |
| GSMUA_Achr5P29290_001 | Banana | nucleus | 43.39 | 45.81 |
| GSMUA_Achr11P... | Banana | nucleus | 43.39 | 45.6 |
| CDY29538 | Canola | nucleus | 43.39 | 45.6 |
| CDY71179 | Canola | nucleus | 22.69 | 45.37 |
| CDY71282 | Canola | nucleus | 22.91 | 44.64 |
| GSMUA_Achr6P34420_001 | Banana | nucleus | 46.48 | 44.33 |
| GSMUA_Achr5P07270_001 | Banana | nucleus | 46.7 | 43.53 |
| CDY07510 | Canola | nucleus | 31.06 | 42.99 |
| CDY09223 | Canola | nucleus | 40.53 | 42.69 |
| GSMUA_Achr8P21030_001 | Banana | nucleus | 47.14 | 42.63 |
| CDY68119 | Canola | nucleus | 31.94 | 42.27 |
| CDY31576 | Canola | nucleus | 41.63 | 41.81 |
| CDX73419 | Canola | nucleus | 31.5 | 41.57 |
| CDX80199 | Canola | nucleus | 41.19 | 41.19 |
| GSMUA_Achr9P04270_001 | Banana | nucleus | 42.29 | 40.76 |
| CDY71682 | Canola | nucleus | 10.57 | 23.19 |
| CDY23833 | Canola | nucleus | 20.93 | 22.35 |
| CDX79921 | Canola | nucleus | 21.15 | 22.27 |
| CDY22537 | Canola | nucleus | 20.93 | 22.2 |
| CDY35402 | Canola | nucleus | 19.82 | 21.9 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078FMT3 | UniProt:A0A078FMT3 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY15760 | ProteinID:CDY15760 | ProteinID:CDY15760.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00090011001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF46 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EB3069 | SEG:seg | : | : |
Description
BnaC04g15640DBnaC04g15640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMT3]
Coordinates
chrLK032057:-:336970..339678
Molecular Weight (calculated)
49311.4 Da
IEP (calculated)
6.951
GRAVY (calculated)
-0.758
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDLNLDADS PESTQYGDSY ADRKTSDGSG NRSETSTSSV INADADEDSC STRAFTLNFD ILKVGSSGGG GGGDESTAVT KEFFPVAGDC GHLRGSSSRG
101: WIDLSFDGSS QGEANLVAPA PAPAPVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFTLGDYE
201: EDMKQVQNLS KEEFVHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDSEVEAARA YDKAAISSNG REAVTNFELS SYQNETNSET
301: NNQGGHDKLD LSLGMSLSPG NASKQNGRLF HYPSNTYETQ RGVSLTIGNE FMGKPVNAPL PYGSSDHRAY WNGYNNPVEG RATEKRSEAE GGGMVSNWGW
401: QGPGQTSAMR PQPPGAQPQL FSVAAASSGF SNFRQQPPND NASASSLGYF YPQP
101: WIDLSFDGSS QGEANLVAPA PAPAPVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFTLGDYE
201: EDMKQVQNLS KEEFVHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDSEVEAARA YDKAAISSNG REAVTNFELS SYQNETNSET
301: NNQGGHDKLD LSLGMSLSPG NASKQNGRLF HYPSNTYETQ RGVSLTIGNE FMGKPVNAPL PYGSSDHRAY WNGYNNPVEG RATEKRSEAE GGGMVSNWGW
401: QGPGQTSAMR PQPPGAQPQL FSVAAASSGF SNFRQQPPND NASASSLGYF YPQP
001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP
Arabidopsis Description
RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.