Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007123.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX73419 | Canola | nucleus | 97.38 | 97.09 |
| AT3G54990.1 | Thale cress | nucleus | 84.55 | 83.81 |
| CDY07510 | Canola | nucleus | 79.59 | 83.23 |
| CDY01432 | Canola | nucleus | 35.86 | 34.17 |
| CDY12814 | Canola | nucleus | 35.86 | 34.07 |
| CDX95767 | Canola | nucleus | 41.4 | 34.05 |
| CDX83296 | Canola | nucleus | 41.98 | 33.03 |
| CDX69282 | Canola | nucleus | 37.61 | 32.25 |
| CDY15760 | Canola | nucleus | 42.27 | 31.94 |
| CDY62228 | Canola | nucleus | 39.65 | 31.55 |
| CDY04573 | Canola | nucleus | 41.69 | 31.5 |
| CDY29538 | Canola | nucleus | 39.36 | 31.25 |
| VIT_13s0019g03550.t01 | Wine grape | nucleus | 44.9 | 30.99 |
| Zm00001d010987_P001 | Maize | nucleus | 34.69 | 30.83 |
| CDY09223 | Canola | nucleus | 38.48 | 30.63 |
| CDX80199 | Canola | nucleus | 40.23 | 30.4 |
| OQU77289 | Sorghum | nucleus | 38.48 | 30.21 |
| CDY31576 | Canola | nucleus | 39.65 | 30.09 |
| Zm00001d035512_P001 | Maize | nucleus | 43.44 | 29.16 |
| TraesCS1B01G076300.1 | Wheat | nucleus | 43.44 | 29.1 |
| TraesCS1D01G059200.1 | Wheat | nucleus | 43.15 | 28.96 |
| TraesCS1A01G058400.1 | Wheat | nucleus | 42.86 | 28.82 |
| HORVU1Hr1G011800.4 | Barley | nucleus | 42.86 | 28.6 |
| Os05t0121600-01 | Rice | nucleus | 41.69 | 27.93 |
| CDY71179 | Canola | nucleus | 16.04 | 24.23 |
| CDY71282 | Canola | nucleus | 16.04 | 23.61 |
| CDY22537 | Canola | nucleus | 23.32 | 18.69 |
| CDY23833 | Canola | nucleus | 23.03 | 18.59 |
| CDX79921 | Canola | nucleus | 22.74 | 18.1 |
| CDY35402 | Canola | nucleus | 21.28 | 17.76 |
| CDY71682 | Canola | nucleus | 10.5 | 17.39 |
| CDY19560 | Canola | nucleus | 4.08 | 13.59 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078JMS1 | UniProt:A0A078JMS1 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY68119 | ProteinID:CDY68119 | ProteinID:CDY68119.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00069921001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF46 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI00025429AC | SEG:seg | : | : | : |
Description
BnaA09g54740DBnaA09g54740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMS1]
Coordinates
chrLK036877:-:547..3773
Molecular Weight (calculated)
38183.9 Da
IEP (calculated)
9.879
GRAVY (calculated)
-0.611
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDLSLGMFS NYGEDQDRKV PFVSTAGDEE SNISSSSSKD SAAGKDFITF GILKRDDDVV PPPPPSRETG DLFPVADARR NIEFSLDDGH WLRLSSLQRN
101: KQQVVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YAAARAYDRA AIKFRGLDAD INFVVEDYRQ DLDKMKNLNK VEFVQTLRRE
201: SASFGRGSSK YKGLTLQKCT QLKTHHDQIH LFQNRGWDAA AIKYNNELGK GGVMKSGASI KGNIHNDLEL SLGISSSSQN IKLTTSDYYK GNQSAMGLFG
301: KHSPIYLPVT TMNPLKTVAA SSGFPFITMT TSSSSSMSTS FDP
101: KQQVVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YAAARAYDRA AIKFRGLDAD INFVVEDYRQ DLDKMKNLNK VEFVQTLRRE
201: SASFGRGSSK YKGLTLQKCT QLKTHHDQIH LFQNRGWDAA AIKYNNELGK GGVMKSGASI KGNIHNDLEL SLGISSSSQN IKLTTSDYYK GNQSAMGLFG
301: KHSPIYLPVT TMNPLKTVAA SSGFPFITMT TSSSSSMSTS FDP
001: MLDLNLKIFS SYNEDQDRKV PLMISTTGEE ESNSSSSSTT DSAARDAFIA FGILKRDDDL VPPPPPPPHK ETGDLFPVVA DARRNIEFSV EDSHWLNLSS
101: LQRNTQKMVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAYAAARA YDRAAIKFRG LDADINFVVD DYRHDIDKMK NLNKVEFVQT
201: LRRESASFGR GSSKYKGLAL QKCTQFKTHD QIHLFQNRGW DAAAIKYNEL GKGEGAMKFG AHIKGNGHND LELSLGISSS SESIKLTTGD YYKGINRSTM
301: GLYGKQSSIF LPMATMKPLK TVAASSGFPF ISMTSSSSSM SNCFDP
101: LQRNTQKMVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAYAAARA YDRAAIKFRG LDADINFVVD DYRHDIDKMK NLNKVEFVQT
201: LRRESASFGR GSSKYKGLAL QKCTQFKTHD QIHLFQNRGW DAAAIKYNEL GKGEGAMKFG AHIKGNGHND LELSLGISSS SESIKLTTGD YYKGINRSTM
301: GLYGKQSSIF LPMATMKPLK TVAASSGFPF ISMTSSSSSM SNCFDP
Arabidopsis Description
SMZAP2-like ethylene-responsive transcription factor SMZ [Source:UniProtKB/Swiss-Prot;Acc:Q6PV68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.