Factsheet for AT3G54990.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68119	Canola	nucleus	83.81	84.55
Bra007123.1-P	Field mustard	nucleus	83.81	84.55
CDX73419	Canola	nucleus	82.95	83.43
CDY07510	Canola	nucleus	78.03	82.32
AT2G39250.1	Thale cress	nucleus	61.56	65.54
AT5G67180.1	Thale cress	nucleus	36.99	36.36
Zm00001d010987_P001	Maize	nucleus	34.97	31.35
AT4G36920.1	Thale cress	nucleus	38.73	31.02
VIT_13s0019g03550.t01	Wine grape	nucleus	44.51	30.99
AT2G28550.3	Thale cress	nucleus	40.75	30.39
OQU77289	Sorghum	nucleus	37.86	29.98
Zm00001d035512_P001	Maize	nucleus	43.06	29.16
TraesCS1B01G076300.1	Wheat	nucleus	42.77	28.91
TraesCS1A01G058400.1	Wheat	nucleus	42.2	28.63
TraesCS1D01G059200.1	Wheat	nucleus	42.2	28.57
HORVU1Hr1G011800.4	Barley	nucleus	42.2	28.4
AT5G60120.2	Thale cress	nucleus	41.62	28.4
Os05t0121600-01	Rice	nucleus	41.33	27.93
AT2G41710.4	Thale cress	nucleus	20.81	15.69

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	EntrezGene:824664	ProteinID:AEE79323.1	ProteinID:AEE79324.1	InterPro:AP2-like_transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ArrayExpress:AT3G54990	EnsemblPlantsGene:AT3G54990	RefSeq:AT3G54990	TAIR:AT3G54990
RefSeq:AT3G54990-TAIR-G	EnsemblPlants:AT3G54990.1	TAIR:AT3G54990.1	EMBL:AY560886	EMBL:AY576275	Unigene:At.50279
EMBL:BT026352	ProteinID:CAB41085.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009658	GO:GO:0009719	GO:GO:0009873
GO:GO:0009987	GO:GO:0016043	InterPro:IPR001471	InterPro:IPR036955	RefSeq:NP_001078290.1	RefSeq:NP_191059.2
PFAM:PF00847	PO:PO:0000037	PO:PO:0000293	PO:PO:0001078	PO:PO:0001185	PO:PO:0004507
PO:PO:0007095	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0025022	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF46	UniProt:Q6PV68	SMART:SM00380	Symbol:SMZ	SUPFAM:SSF54171	UniParc:UPI000035876F
SEG:seg	:	:	:	:	:

Description

SMZAP2-like ethylene-responsive transcription factor SMZ [Source:UniProtKB/Swiss-Prot;Acc:Q6PV68]

Coordinates

chr3:-:20373718..20376522

Molecular Weight (calculated)

38673.6 Da

IEP (calculated)

9.696

GRAVY (calculated)

-0.593

Length

346 amino acids

Sequence
(BLAST)

001: MLDLNLKIFS SYNEDQDRKV PLMISTTGEE ESNSSSSSTT DSAARDAFIA FGILKRDDDL VPPPPPPPHK ETGDLFPVVA DARRNIEFSV EDSHWLNLSS
101: LQRNTQKMVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAYAAARA YDRAAIKFRG LDADINFVVD DYRHDIDKMK NLNKVEFVQT
201: LRRESASFGR GSSKYKGLAL QKCTQFKTHD QIHLFQNRGW DAAAIKYNEL GKGEGAMKFG AHIKGNGHND LELSLGISSS SESIKLTTGD YYKGINRSTM
301: GLYGKQSSIF LPMATMKPLK TVAASSGFPF ISMTSSSSSM SNCFDP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.