Factsheet for TraesCS1D01G059200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39250.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT2G39250.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT2G39250.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT2G39250.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT2G39250.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G058400.1	Wheat	nucleus	98.83	99.02
TraesCS1B01G076300.1	Wheat	nucleus	97.46	97.27
HORVU1Hr1G011800.4	Barley	nucleus	96.67	96.11
OQU77289	Sorghum	nucleus	63.21	73.91
Os05t0121600-01	Rice	nucleus	67.12	66.99
Zm00001d010987_P001	Maize	nucleus	47.95	63.47
PGSC0003DMT400065313	Potato	nucleus	49.32	50.5
Solyc11g072600.1.1	Tomato	nucleus	45.79	48.65
TraesCS5D01G486600.2	Wheat	nucleus	42.27	48.0
Solyc04g049800.2.1	Tomato	nucleus	36.4	46.73
PGSC0003DMT400031401	Potato	nucleus	36.59	45.95
VIT_13s0019g03550.t01	Wine grape	nucleus	43.84	45.07
CDY68119	Canola	nucleus	28.96	43.15
Bra007123.1-P	Field mustard	nucleus	28.96	43.15
CDX73419	Canola	nucleus	28.96	43.02
CDY07510	Canola	nucleus	27.4	42.68
AT3G54990.1	Thale cress	nucleus	28.57	42.2
TraesCS2D01G515800.1	Wheat	nucleus	38.36	40.33
KRH70384	Soybean	nucleus	32.09	39.42
KRH33335	Soybean	nucleus	31.12	38.5
TraesCS7D01G512600.1	Wheat	nucleus	32.68	38.48
AT2G39250.1	Thale cress	nucleus	24.27	38.15
Bra002510.1-P	Field mustard	nucleus	33.46	37.83
Bra020262.1-P	Field mustard	nucleus	31.7	37.76
CDY31576	Canola	nucleus	33.27	37.61
CDX80199	Canola	nucleus	33.27	37.44
CDY09223	Canola	nucleus	31.51	37.35
AT5G60120.2	Thale cress	nucleus	33.07	33.33
TraesCS6D01G285400.2	Wheat	nucleus	19.37	26.4
TraesCS7D01G292500.1	Wheat	plastid	17.42	25.36
TraesCS1D01G242800.1	Wheat	nucleus	18.2	22.04

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1D01G059200	EnsemblPlants:TraesCS1D01G059200.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:39288052..39291865

Molecular Weight (calculated)

55677.8 Da

IEP (calculated)

7.108

GRAVY (calculated)

-0.686

Length

511 amino acids

Sequence
(BLAST)

001: MELDLNVEEK PAAVARSDSG TSESSVLNAE ASCGGGAAPA EEASSSTRQP APAPRAVLEF SILRSSASAE GENDVGADDD EEEATPSPPP PPPRHYHQHL
101: LQPQQLVTQE LFPAAAAAGG PPPMPVPQHW AELGFFRPAA PPPDMRILQL QQQQAHAPPP PPPPAQPPVA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI
201: WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEDDMKQM KGLSKEEFVH VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI
301: YLGLFDNEVE AARAYDKAAI KCNGREAVTN FEPSTYDAEL LNEVAAEGAD VDLNLSISQP TSQSPKRDKS SLGLQLHHGS YEGSELKRPK VDAPPEMVAI
401: PHRYPLLTEH PPIWHGQSYP LFLNNEEAAR DHSRRPEVAT GAVPTWAWRV SHPPPTQPMP LFSSSSSAAA SSGFSKTAAA AAPGAPSASF RFDPMAPSSS
501: SSNQHHHHHP R

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.