CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39250.1	EER88112	AT3G47620.1	21798944
AT2G39250.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G059200.1	Wheat	nucleus	73.91	63.21
TraesCS1B01G076300.1	Wheat	nucleus	73.46	62.7
TraesCS1A01G058400.1	Wheat	nucleus	72.54	62.16
HORVU1Hr1G011800.4	Barley	nucleus	72.77	61.87
Os05t0121600-01	Rice	nucleus	70.48	60.16
Zm00001d010987_P001	Maize	nucleus	51.95	58.81
EER87748	Sorghum	nucleus	24.26	54.08
EER93202	Sorghum	nucleus	47.83	48.38
KXG24410	Sorghum	mitochondrion	8.24	43.9
PGSC0003DMT400065313	Potato	nucleus	50.11	43.89
Solyc04g049800.2.1	Tomato	nucleus	39.59	43.47
PGSC0003DMT400031401	Potato	nucleus	40.05	43.0
Solyc11g072600.1.1	Tomato	nucleus	46.68	42.41
VIT_13s0019g03550.t01	Wine grape	nucleus	46.22	40.64
CDX73419	Canola	nucleus	30.43	38.66
OQU82446	Sorghum	endoplasmic reticulum, vacuole	35.01	38.64
CDY68119	Canola	nucleus	30.21	38.48
Bra007123.1-P	Field mustard	nucleus	30.21	38.48
CDY07510	Canola	nucleus	28.83	38.41
EER96101	Sorghum	plastid	46.91	38.03
AT3G54990.1	Thale cress	nucleus	29.98	37.86
OQU76762	Sorghum	nucleus	38.67	35.81
AT2G39250.1	Thale cress	nucleus	26.54	35.69
CDY31576	Canola	nucleus	36.16	34.96
Bra002510.1-P	Field mustard	nucleus	36.16	34.96
Bra020262.1-P	Field mustard	nucleus	34.1	34.73
CDX80199	Canola	nucleus	35.93	34.58
KRH70384	Soybean	nucleus	32.72	34.38
CDY09223	Canola	nucleus	33.87	34.34
KRH33335	Soybean	nucleus	31.58	33.41
AT5G60120.2	Thale cress	nucleus	36.16	31.16
KXG24541	Sorghum	nucleus	20.14	27.76
KXG30761	Sorghum	nucleus	20.37	24.38
EES19464	Sorghum	nucleus	20.82	21.88

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A1Z5R182	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:OQU77289	ProteinID:OQU77289	ProteinID:OQU77289.1	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	EnsemblPlantsGene:SORBI_3009G024600
SUPFAM:SSF54171	UniParc:UPI000B8B9947	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:2179784..2183620

Molecular Weight (calculated)

48506.0 Da

IEP (calculated)

8.846

GRAVY (calculated)

-0.880

Length

437 amino acids

Sequence
(BLAST)

001: SDSDAAGADD DDDATPSPPP HHHQHHHHQH HHQQQLVTRE LFPAGTGPPL PSPQHWAELG FFRADPPRPH QQQPDIRILP HPHQHPHATP PVAPPPPVQP
101: QPAKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNLSDYEDDM KQQMKSLSKE EFVHVLRRQS
201: TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE AVTNFEPSTY DGELLTEVST EVAEVDLNLS ISQPASQSPK
301: RDKSCLGLQL HHGSFEGSES KKTKIDTPSE LSGHPHRFPL MTEHPPAWPA QSHPFFTNHE STSSRDLNRR PEGGAPSWAW KVTAAPPHTL PLPLFSSSSS
401: SAAASSGFSN TATTAAPSAS LRFDAPPSSS SSHHHRR

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.