CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046621_P001	Maize	nucleus	66.74	80.15
Os06t0639200-01	Rice	nucleus	43.64	61.68
TraesCS7B01G440400.1	Wheat	nucleus	48.73	56.79
TraesCS7D01G512600.1	Wheat	nucleus	49.79	54.15
EER87748	Sorghum	nucleus	20.76	50.0
HORVU7Hr1G116220.4	Barley	nucleus	48.94	39.02
OQU77289	Sorghum	nucleus	35.81	38.67
EER93202	Sorghum	nucleus	33.9	37.04
KXG24410	Sorghum	mitochondrion	6.36	36.59
OQU82446	Sorghum	endoplasmic reticulum, vacuole	29.03	34.6
EER96101	Sorghum	plastid	34.32	30.06
KXG24541	Sorghum	nucleus	18.22	27.13
Solyc02g030200.1.1	Tomato	nucleus	3.18	26.32
KXG30761	Sorghum	nucleus	18.86	24.38
EES19464	Sorghum	nucleus	16.74	18.99
CDY19560	Canola	nucleus	2.97	13.59

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A1W0VU14	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:OQU76762	ProteinID:OQU76762	ProteinID:OQU76762.1	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF9	SMART:SM00380	EnsemblPlantsGene:SORBI_3010G202700
SUPFAM:SSF54171	UniParc:UPI0009DC8D64	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:54551925..54555535

Molecular Weight (calculated)

51525.1 Da

IEP (calculated)

8.271

GRAVY (calculated)

-0.603

Length

472 amino acids

Sequence
(BLAST)

001: MAATRRAFFH YCGVDGIARA APGEAELLPQ VGGRRPEEGA SSSMIFGFPM PVVPGRPAAA VTQQFFPATA AAAPAQQQAT TEEQCHVPAG FSAAEQWVRS
101: ASRKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGVRIALFLG GFDTAQAAAR AYDQAAIKFR GVNADINFAL DDYKDEMKKM KSFSKEEFVQ
201: VLRRQGAGFV RGSSRFRGVT QHKCGKWEAR IGQLMGKKYV YLGLYDTETE AAQAYDKAAI KCYGKEAVTN FDAQGYDNEL QLQLQSWDDG ELDLELSLSC
301: SGSDPPSTVA VDASFSSAPG SKQRTMALTL DLPAAEETSA SYPHRSILTR PPPPTAAGMF WRPADDHVHV QHHPHPGIGS RDDDNDTQLR MQLQMHLGDE
401: QQEQMGSGGG GPRARWSNPS GNGINWAPPY AYGASARPGN DDDEDASMQR RAAAASSGFP LRQLGAACRP SR

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.