CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019230_P002	Maize	plastid	87.94	88.6
Os07t0235800-01	Rice	nucleus	63.45	78.44
EER87748	Sorghum	nucleus	25.97	71.43
EER93202	Sorghum	nucleus	51.21	63.89
OQU77289	Sorghum	nucleus	38.03	46.91
KXG24410	Sorghum	mitochondrion	6.68	43.9
OQU82446	Sorghum	endoplasmic reticulum, vacuole	27.09	36.87
OQU76762	Sorghum	nucleus	30.06	34.32
KXG24541	Sorghum	nucleus	15.77	26.81
KXG30761	Sorghum	nucleus	17.44	25.75
EES19464	Sorghum	nucleus	17.81	23.08

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	EntrezGene:8078470	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
UniProt:C5XDI6	InterPro:DNA-bd_dom_sf	EnsemblPlants:EER96101	ProteinID:EER96101	ProteinID:EER96101.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF36	SMART:SM00380
EnsemblPlantsGene:SORBI_3002G083600	SUPFAM:SSF54171	UniParc:UPI0001A839CE	RefSeq:XP_002459580.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:8923187..8929483

Molecular Weight (calculated)

57393.3 Da

IEP (calculated)

8.738

GRAVY (calculated)

-0.431

Length

539 amino acids

Sequence
(BLAST)

001: MASPAIPFAP LTSHRAVPFV LGCPPPWPPR PPPAAPGRPP RPDAAAAARL LEEEARAGSS RARSPAGRPE LESMVLDLNA ESPTAGSASA TSSSSGVFRF
101: DLLGGTPDEE GCSPSPPVVT RQLFPLPSYP DAAAAPTAAS NGSPPPPQAA GPWARRAADL VAPALGQGQG QGAVVMPAPS SPPAAVSPAA GKKSRRGPRS
201: RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGLDADINFQ LKDYEDDLKQ MKNWTKEEFV HILRRQSTGF ARGSSKYRGV
301: TLHKCGRWEA RMGQLLGKKY IYLGLFDSEI EAARAYDRAA IRFNGPDAVT NFDSSSYDGD VPLPTAIEKD VVDGDILDLN LRISQPNVHD LKSDGTLTGF
401: GLGCNSPEAS SSIVSQPISP QWPVHPHSTP MQLQHPHLYA SPCPGFFVNL REAPMEEEKR AERAGPEPAF PSWAWQTQGS PAPFLPATAT AASSGFSTAA
501: TTTGVDAATA ARSVPPSLSG GPRQLFSGYQ LQLRFPPTA

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.