CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93202	Sorghum	nucleus	98.47	44.68
Zm00001d034629_P001	Maize	nucleus	97.45	44.11
HORVU5Hr1G112440.1	Barley	nucleus	87.24	38.86
TraesCS5A01G473800.1	Wheat	nucleus	87.24	38.26
TraesCS5D01G486600.2	Wheat	nucleus	87.76	38.22
Os03t0818800-01	Rice	nucleus	80.61	36.41
EER96101	Sorghum	plastid	71.43	25.97
OQU77289	Sorghum	nucleus	54.08	24.26
KXG24410	Sorghum	mitochondrion	9.18	21.95
OQU76762	Sorghum	nucleus	50.0	20.76
OQU82446	Sorghum	endoplasmic reticulum, vacuole	35.71	17.68
KXG30761	Sorghum	nucleus	30.1	16.16
EES19464	Sorghum	nucleus	31.12	14.66
KXG24541	Sorghum	nucleus	23.47	14.51
TraesCS5B01G486900.1	Wheat	nucleus	15.31	11.49

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
UniProt:C5Z2W8	InterPro:DNA-bd_dom_sf	EnsemblPlants:EER87748	ProteinID:EER87748	ProteinID:EER87748.3	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PIRSF:PIRSF038123	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF67	SMART:SM00380	EnsemblPlantsGene:SORBI_3010G015000	SUPFAM:SSF54171	UniParc:UPI0009DC89AF	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:1229180..1230277

Molecular Weight (calculated)

21317.1 Da

IEP (calculated)

10.441

GRAVY (calculated)

-0.584

Length

196 amino acids

Sequence
(BLAST)

001: MVLDLNVASP ADSGTSSSSV LNSADGGFRF GLLGSPVDDD DCSGEMAPGA STGFMTRQLF PSPTPPAEPE PPAAPVPVWQ PRRAEDLGAA QRPVAPAKKT
101: RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGLE ADINFRFARG SSKYRGVTLH KCGRWEARMG QLLGKK

Best Arabidopsis Sequence Match ( AT2G28550.2 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKK

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.