Factsheet for TraesCS5B01G486900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G486600.2	Wheat	nucleus	98.08	56.89
TraesCS5A01G473800.1	Wheat	nucleus	96.55	56.38
HORVU5Hr1G112440.1	Barley	nucleus	93.87	55.68
Zm00001d034629_P001	Maize	nucleus	71.65	43.19
EER93202	Sorghum	nucleus	71.26	43.06
Os03t0818800-01	Rice	nucleus	70.5	42.4
TraesCS1B01G076300.1	Wheat	nucleus	43.68	22.27
TraesCS2B01G542400.2	Wheat	nucleus	38.7	20.87
TraesCS7B01G440400.1	Wheat	nucleus	30.65	19.75
EER87748	Sorghum	nucleus	11.49	15.31
TraesCS7B01G186900.1	Wheat	nucleus	18.39	13.6
TraesCS6B01G334700.1	Wheat	nucleus	17.62	12.27
TraesCS1B01G254300.1	Wheat	nucleus	16.09	9.95

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF67	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS5B01G486900	EnsemblPlants:TraesCS5B01G486900.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:658092703..658095066

Molecular Weight (calculated)

28918.5 Da

IEP (calculated)

7.117

GRAVY (calculated)

-0.717

Length

261 amino acids

Sequence
(BLAST)

001: MRNWTKEEFV HILRRQSTGF ARGSSKYRGV TLHKCGRWEA RMGQLLGKKY IYLGLFDSEV EAARAYDRAA IRFNGREAVT NFESSSYNGD APPDAENEAI
101: VDADALDLDL RMSQPTAHDP KRDNIVAGLQ LTFDSPESST TMLSSQPMSS SSSQWPVHQH GTAVPPQQHQ RLYPSACHGF YPNVQVQVQE RPMEARPPEP
201: PSCFPGWGWQ AQATPPGSSH SPLLYAAASS GFSTAAGAHP APPPPSYPDH HRFYFPRPPD N

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.