Factsheet for HORVU5Hr1G112440.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G486900.1	Wheat	nucleus	55.68	93.87
TraesCS5A01G473800.1	Wheat	nucleus	93.41	91.95
TraesCS5D01G486600.2	Wheat	nucleus	93.64	91.56
EER87748	Sorghum	nucleus	38.86	87.24
Zm00001d034629_P001	Maize	nucleus	75.23	76.44
EER93202	Sorghum	nucleus	75.0	76.39
Os03t0818800-01	Rice	nucleus	72.5	73.5
HORVU2Hr1G061450.1	Barley	nucleus	12.73	52.34
HORVU2Hr1G063070.1	Barley	nucleus	10.68	47.96
HORVU1Hr1G011800.4	Barley	nucleus	48.18	41.25
HORVU7Hr1G070230.12	Barley	nucleus	18.86	27.95
HORVU7Hr1G116220.4	Barley	nucleus	35.45	26.35
HORVU6Hr1G075640.13	Barley	nucleus	20.68	24.33
HORVU1Hr1G056500.15	Barley	nucleus, plastid	20.0	19.56
HORVU3Hr1G004480.38	Barley	nucleus, plastid	11.36	17.79

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:AK355002	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	UniProt:F2CTQ0	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:HORVU5Hr1G112440	EnsemblPlants:HORVU5Hr1G112440.1	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF67	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002004E26	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CTQ0]

Coordinates

chrchr5H:+:639351730..639355653

Molecular Weight (calculated)

48352.3 Da

IEP (calculated)

7.449

GRAVY (calculated)

-0.590

Length

440 amino acids

Sequence
(BLAST)

001: MVLDLNVESP ADSGTSSSSV LNSADAAGAF RFGLLGSLDD DDCSGELAPA AASGFVTRQL FPAPPPAPGV MMGQAPAPPP TAPVWQPRRA EELVVAQRVA
101: PKKKTRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGLEADINF NLSDYEEDLK QMRNWTKEEF VHILRRQSTG
201: FARGSSKYRG VTLHKCGRWE ARMGQLLGKK YIYLGLFDSE VEAARAYDRA AIRFNGRDAV TNFDSSSYNG DATPDVENEA IVDADALDLD LRMSQPTAHD
301: PKRDNIIAGL QLTFDSPESS TTMVSSQPMS SSSQWPVHQH GTAVPPQQHQ RLYPSACHGF YPNVQVQVQE RPLEPRPPEP SSFPGWGWHA QAVPPGSSHS
401: LLLYAAASSG FSTAAGANPA PPPSYPDHHH RFYFPRPPDN

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.