Factsheet for Zm00001d034629_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87748	Sorghum	nucleus	44.11	97.45
EER93202	Sorghum	nucleus	94.92	95.14
HORVU5Hr1G112440.1	Barley	nucleus	76.44	75.23
TraesCS5D01G486600.2	Wheat	nucleus	78.06	75.11
TraesCS5A01G473800.1	Wheat	nucleus	77.37	74.94
Os03t0818800-01	Rice	nucleus	72.06	71.89
TraesCS5B01G486900.1	Wheat	nucleus	43.19	71.65
Zm00001d019230_P002	Maize	plastid	62.82	50.84
Zm00001d010987_P001	Maize	nucleus	43.19	48.45
Zm00001d026448_P001	Maize	nucleus	38.34	40.19
Zm00001d035512_P001	Maize	nucleus	47.34	40.12
Zm00001d046621_P001	Maize	nucleus	34.41	37.91
Zm00001d002075_P001	Maize	nucleus	43.88	35.65
Zm00001d037511_P001	Maize	nucleus	13.86	30.3
Zm00001d024468_P003	Maize	nucleus	18.24	27.24
Zm00001d014670_P001	Maize	endoplasmic reticulum, golgi	10.62	24.6
Zm00001d018050_P003	Maize	nucleus	18.48	20.73
Zm00001d013170_P001	Maize	nucleus	17.55	15.9
Zm00001d038087_P003	Maize	mitochondrion	16.17	14.49

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	EntrezGene:541684	UniProt:A0A060D7J5	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EMBL:KJ727838	ProteinID:ONM10835.1	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF67	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0001E24924	EnsemblPlantsGene:Zm00001d034629	EnsemblPlants:Zm00001d034629_P001	EnsemblPlants:Zm00001d034629_T001	SEG:seg	:

Description

tasselseed6 tasselseed6

Coordinates

chr1:+:298422859..298427050

Molecular Weight (calculated)

47607.1 Da

IEP (calculated)

6.842

GRAVY (calculated)

-0.668

Length

433 amino acids

Sequence
(BLAST)

001: MVLDLNVASP ADSGTSSSSV LNSADGGFRF GLLGSPVDDD DCSGEMAPGA STGFMTRQLF PSPTPPAEPE PEPVAAPVPV WQPQRAEDLG MAQRPVAPAK
101: KTRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LDADINFSLS DYEDDLKQMR NWTKEEFVHI LRRQSTGFAR
201: GSSKYRGVTL HKCGRWEARM GQLLGKKYIY LGLFDSEVEA ARAYDRAALR FNGREAVTNF EPSSYNAGDN NLRDTETEAI DDGDAIDLDL RISQPNVQDP
301: KRDNTLAGLQ PTCDSPESSN TMASQPMSSS SPWPGYHQNP AVSFHHQRLY SSACHGFFPN HQVQERPVER RPELGAQPFP SWAWQAQGSP HVPLHHSAAS
401: SGFSTAAGAN GGMPLPSHPP AQFPTTTNPF FFP

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.