Factsheet for Zm00001d010987_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39250.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT2G39250.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT2G39250.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT2G39250.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035512_P001	Maize	nucleus	74.87	56.56
OQU77289	Sorghum	nucleus	58.81	51.95
TraesCS1B01G076300.1	Wheat	nucleus	63.73	48.05
TraesCS1A01G058400.1	Wheat	nucleus	63.47	48.04
TraesCS1D01G059200.1	Wheat	nucleus	63.47	47.95
HORVU1Hr1G011800.4	Barley	nucleus	62.95	47.28
Zm00001d034629_P001	Maize	nucleus	48.45	43.19
PGSC0003DMT400065313	Potato	nucleus	50.78	39.28
Solyc04g049800.2.1	Tomato	nucleus	39.64	38.44
VIT_13s0019g03550.t01	Wine grape	nucleus	49.22	38.23
Zm00001d026448_P001	Maize	nucleus	40.67	38.01
PGSC0003DMT400031401	Potato	nucleus	39.64	37.59
Solyc11g072600.1.1	Tomato	nucleus	46.11	37.01
Zm00001d046621_P001	Maize	nucleus	37.56	36.9
CDY07510	Canola	nucleus	30.05	35.37
AT3G54990.1	Thale cress	nucleus	31.35	34.97
CDX73419	Canola	nucleus	31.09	34.88
CDY68119	Canola	nucleus	30.83	34.69
Bra007123.1-P	Field mustard	nucleus	30.83	34.69
KRH70384	Soybean	nucleus	36.79	34.13
KRH33335	Soybean	nucleus	35.23	32.93
Zm00001d002075_P001	Maize	nucleus	45.08	32.65
Zm00001d019230_P002	Maize	plastid	45.08	32.52
Bra002510.1-P	Field mustard	nucleus	36.79	31.42
CDY31576	Canola	nucleus	36.53	31.19
AT2G39250.1	Thale cress	nucleus	26.17	31.08
CDX80199	Canola	nucleus	36.53	31.06
Bra020262.1-P	Field mustard	nucleus	34.46	31.0
CDY09223	Canola	nucleus	34.46	30.86
Zm00001d024468_P003	Maize	nucleus	21.5	28.62
AT5G60120.2	Thale cress	nucleus	36.27	27.61
Zm00001d037511_P001	Maize	nucleus	13.47	26.26
Zm00001d014670_P001	Maize	endoplasmic reticulum, golgi	11.66	24.06
Zm00001d018050_P003	Maize	nucleus	18.65	18.65
Zm00001d013170_P001	Maize	nucleus	18.65	15.06
Zm00001d038087_P003	Maize	mitochondrion	15.29	12.22

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A1D6FVE9	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:AQK95419.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00084247B8	EnsemblPlantsGene:Zm00001d010987
EnsemblPlants:Zm00001d010987_P001	EnsemblPlants:Zm00001d010987_T001	SEG:seg	:	:	:

Description

rap2.7 orthologue rap2.7 orthologue

Coordinates

chr8:+:136009216..136012084

Molecular Weight (calculated)

42747.0 Da

IEP (calculated)

8.889

GRAVY (calculated)

-0.714

Length

386 amino acids

Sequence
(BLAST)

001: MQLDLNVAEA PPPVEMEASD SGSSVLNASE AASAGGAPAP AEEGSSSTPA VLEFSILIRS DSDAAGADED EDATPSPPPR HRHQHQQQLV TRELFPAGAG
101: PPAPTPRHWA ELGFFRADLQ QQQAPGPRIV PHPHAAPPPA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLV VVRLLADIRR WIRHRSRRCK
201: ARTGLDAQNS SAYDRAAIKF RGVDADINFN LSDYEDDMKQ MGSLSKEEFV HVLRRQSTGF SRGSSRYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV
301: EAARAYDKAA IKCNGREAVT NFEPSTYHGE LPTEVADVDL NLSISQPSPQ RDKNSCLGLQ LHHGPFEGSE LKKTKASAND RYTLTS

Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.