Factsheet for Solyc04g049800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031401	Potato	nucleus	86.43	84.52
Solyc11g072600.1.1	Tomato	nucleus	49.75	41.16
VIT_13s0019g03550.t01	Wine grape	nucleus	51.01	40.85
Solyc09g007260.2.1	Tomato	nucleus	46.48	40.66
Solyc03g044300.2.1	Tomato	nucleus	39.95	39.65
Zm00001d010987_P001	Maize	nucleus	38.44	39.64
OQU77289	Sorghum	nucleus	43.47	39.59
Solyc10g084340.1.1	Tomato	nucleus	45.48	39.18
Solyc06g075510.2.1	Tomato	nucleus	46.48	39.03
KRH70384	Soybean	nucleus	40.2	38.46
KRH33335	Soybean	nucleus	39.45	38.01
Os05t0121600-01	Rice	nucleus	47.49	36.91
CDY09223	Canola	nucleus	39.7	36.66
Bra020262.1-P	Field mustard	nucleus	39.45	36.6
TraesCS1A01G058400.1	Wheat	nucleus	46.73	36.47
TraesCS1D01G059200.1	Wheat	nucleus	46.73	36.4
TraesCS1B01G076300.1	Wheat	nucleus	46.48	36.13
CDY31576	Canola	nucleus	40.95	36.06
Bra002510.1-P	Field mustard	nucleus	40.95	36.06
Zm00001d035512_P001	Maize	nucleus	46.23	36.01
HORVU1Hr1G011800.4	Barley	nucleus	46.48	35.99
CDX80199	Canola	nucleus	40.45	35.46
Solyc02g093150.2.1	Tomato	nucleus	38.94	34.75
Solyc02g064960.2.1	Tomato	nucleus	42.71	33.73
AT5G60120.2	Thale cress	nucleus	41.21	32.35
Solyc02g030200.1.1	Tomato	nucleus	4.52	31.58
Solyc02g030210.2.1	Tomato	nucleus	18.84	21.37
Solyc03g123430.2.1	Tomato	nucleus	19.85	15.4

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K4BRV6	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46
SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc04g049800.2	EnsemblPlants:Solyc04g049800.2.1	UniParc:UPI00027669E6	SEG:seg

Description

No Description!

Coordinates

chr4:+:43567203..43569733

Molecular Weight (calculated)

44005.6 Da

IEP (calculated)

9.077

GRAVY (calculated)

-0.572

Length

398 amino acids

Sequence
(BLAST)

001: MLDLNNDSVF FKDDSVTSNT DSNSSSFQPS LSTLNFSILK SDRVFEIEDE SSTTGGGDML TRQLFPVKGE IQGQSQCWLN LSVSESAGLE VPVYKPPVHK
101: KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNIT DYNEDMKQMK NLSKEEFVQV LRRHSNGFSR
201: GNSKYRGVTL HKCGRWEGQF IGKKAYDKCD GREAVTNFVA STYEREKKED KRDGGSGENL DLNLWISLPL EGGLKGGEIG RNVHFNFGGR DMVIGKTFET
301: QSSSIVPQGP ATMSKLSIFT GMYPGFPPHS TEGAMMKAEA ASSCPVLPNW GWKIHSQGVV TPVPVFSSSA ASSGFSTATT LHTNSLLPPS NQLRLPTN

Best Arabidopsis Sequence Match ( AT2G28550.1 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAINTNGR EAVTNFEMSS YQNEINSESN
301: NSEIDLNLGI SLSTGNAPKQ NGRLFHFPSN TYETQRGVSL RIDNEYMGKP VNTPLPYGSS DHRLYWNGAC PSYNNPAEGR ATEKRSEAEG MMSNWGWQRP
401: GQTSAVRPQP PGPQPPPLFS VAAASSGFSH FRPQPPNDNA TRGYFYPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.