Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016881 | Potato | nucleus | 52.11 | 96.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.51 | 60.11 |
| Solyc11g072600.1.1 | Tomato | nucleus | 57.59 | 56.76 |
| GSMUA_Achr8P01980_001 | Banana | nucleus | 43.25 | 55.41 |
| GSMUA_Achr10P... | Banana | nucleus | 48.95 | 52.49 |
| GSMUA_Achr11P... | Banana | nucleus | 45.78 | 50.23 |
| KRH67634 | Soybean | nucleus | 47.05 | 48.58 |
| GSMUA_Achr5P29290_001 | Banana | nucleus | 42.83 | 47.21 |
| GSMUA_Achr9P03060_001 | Banana | nucleus | 43.04 | 47.11 |
| GSMUA_Achr8P21030_001 | Banana | nucleus | 49.79 | 47.01 |
| Solyc04g049800.2.1 | Tomato | nucleus | 39.03 | 46.48 |
| GSMUA_Achr6P33140_001 | Banana | nucleus | 46.62 | 46.33 |
| Solyc03g044300.2.1 | Tomato | nucleus | 39.03 | 46.13 |
| KRG95917 | Soybean | mitochondrion | 47.89 | 45.95 |
| GSMUA_Achr5P07270_001 | Banana | nucleus | 46.62 | 45.38 |
| VIT_08s0040g03180.t01 | Wine grape | nucleus | 47.26 | 45.25 |
| Solyc10g084340.1.1 | Tomato | nucleus | 43.46 | 44.59 |
| GSMUA_Achr6P34420_001 | Banana | nucleus | 43.46 | 43.28 |
| Solyc02g093150.2.1 | Tomato | nucleus | 40.08 | 42.6 |
| Solyc09g007260.2.1 | Tomato | nucleus | 40.72 | 42.42 |
| Solyc02g064960.2.1 | Tomato | nucleus | 42.19 | 39.68 |
| GSMUA_Achr9P04270_001 | Banana | nucleus | 39.03 | 39.28 |
| Solyc02g030200.1.1 | Tomato | nucleus | 4.01 | 33.33 |
| Solyc02g030210.2.1 | Tomato | nucleus | 15.61 | 21.08 |
| Solyc03g123430.2.1 | Tomato | nucleus | 20.68 | 19.1 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | UniProt:K4C9R6 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR32467 |
| PANTHER:PTHR32467:SF46 | SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:Solyc06g075510.2 | EnsemblPlants:Solyc06g075510.2.1 | UniParc:UPI0002766B7B |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:46865263..46868859
Molecular Weight (calculated)
52536.9 Da
IEP (calculated)
7.914
GRAVY (calculated)
-0.694
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDLNVSVIY NNDLPQVSLL DESATSNSSL RNAEATTSAG DEDSCAGELF AFNFGILKVE GAETSRSSNN DDEEGYGKNQ RVTHSQFVTR QLFPVDDGEL
101: NRKQTDRVIL SSARSGTSIG FGDVRIIQQQ QTEQPKQQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHTAARA YDRAAIKFRG
201: VDADINFSLS DYEEDMQQMK NLGKEEFVHL LRRHSTGFSR GSSKFRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARAYDKAAIK TSGREAVTNF
301: EPSSYEGETM SLPQSEGSQH DLDLNLGIST TSSKENDRLG GSRYHPYDMQ DATKPKMDKP GSVIVGSSHL KGLPMSSQQA QLWTGIYSNF SSSYEGRAYD
401: KRKDTGSSQG PPNWALQMPS QVDTNSPLTM FCTAASSGFF IPSTTSITSS TSALATSTNA SQCFYQINPR LPLP
101: NRKQTDRVIL SSARSGTSIG FGDVRIIQQQ QTEQPKQQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHTAARA YDRAAIKFRG
201: VDADINFSLS DYEEDMQQMK NLGKEEFVHL LRRHSTGFSR GSSKFRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARAYDKAAIK TSGREAVTNF
301: EPSSYEGETM SLPQSEGSQH DLDLNLGIST TSSKENDRLG GSRYHPYDMQ DATKPKMDKP GSVIVGSSHL KGLPMSSQQA QLWTGIYSNF SSSYEGRAYD
401: KRKDTGSSQG PPNWALQMPS QVDTNSPLTM FCTAASSGFF IPSTTSITSS TSALATSTNA SQCFYQINPR LPLP
001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP
Arabidopsis Description
RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.