Factsheet for Solyc03g044300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016585	Potato	nucleus	90.27	76.21
Solyc02g093150.2.1	Tomato	nucleus	63.09	56.73
TraesCS2A01G514200.1	Wheat	nucleus	51.12	55.56
CDX69282	Canola	nucleus	55.36	55.5
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	48.63	53.87
AT4G36920.1	Thale cress	nucleus	57.86	53.7
Bra011741.1-P	Field mustard	nucleus	57.86	53.58
CDY62228	Canola	nucleus	56.61	52.67
CDY29538	Canola	nucleus	56.36	52.31
Bra017809.1-P	Field mustard	nucleus	56.11	52.08
CDY71179	Canola	nucleus	28.68	50.66
CDY71282	Canola	nucleus	29.18	50.21
Solyc02g064960.2.1	Tomato	nucleus	62.59	49.8
Os04t0649100-03	Rice	nucleus	54.11	47.17
Zm00001d026448_P001	Maize	nucleus	46.38	45.04
TraesCS2B01G542400.2	Wheat	nucleus	51.62	42.77
TraesCS2D01G515800.1	Wheat	nucleus	51.62	42.59
Solyc04g049800.2.1	Tomato	nucleus	39.65	39.95
OQU82446	Sorghum	endoplasmic reticulum, vacuole	39.4	39.9
Solyc10g084340.1.1	Tomato	nucleus	45.89	39.83
Zm00001d002075_P001	Maize	nucleus	52.62	39.59
Solyc09g007260.2.1	Tomato	nucleus	44.89	39.56
Solyc06g075510.2.1	Tomato	nucleus	46.13	39.03
Solyc11g072600.1.1	Tomato	nucleus	46.63	38.88
Solyc02g030200.1.1	Tomato	nucleus	4.49	31.58
Solyc02g030210.2.1	Tomato	nucleus	18.45	21.08
Solyc03g123430.2.1	Tomato	nucleus	25.94	20.27

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:B2ZP48
InterPro:DNA-bd_dom_sf	EMBL:EU677382	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF18	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc03g044300.2	EnsemblPlants:Solyc03g044300.2.1
UniParc:UPI000175123F	SEG:seg	:	:	:	:

Description

APETALA2-like protein [Source:UniProtKB/TrEMBL;Acc:B2ZP48]

Coordinates

chr3:+:8777728..8782356

Molecular Weight (calculated)

44946.9 Da

IEP (calculated)

7.943

GRAVY (calculated)

-0.864

Length

401 amino acids

Sequence
(BLAST)

001: MWNLNDSPDQ TMEYESDEGI TVRSESNSIS SALLVVEDGN SSEEDGEKGK KKKSNNTPGK IFGFSIKDHN LESPVVTRQF FPVDNESTNF PRAQWAGIKF
101: CESEPPLVNG LVGNKIDVLQ QQPIKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGAEADI NFTSKDYEDD
201: LKQMSNLTKE EFVHVLRRQS TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEVEAARAYD KAAIKCNGKD AVTNFDRSIY ENELNSTECT
301: DNATDHNLDL SLGGSSQEMG DNRGQNSSSN LQLDGHWGHQ GSSRHNNKVQ TPSSNNVGQI GGTSNFQNNY EIIATAAASS GFPQQIIRTQ NNGFHHYFMR
401: P

Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.