Factsheet for GSMUA_Achr8P18550_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 5
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06100_001	Banana	nucleus	47.51	50.59
TraesCS2A01G514200.1	Wheat	nucleus	51.1	50.14
Solyc03g044300.2.1	Tomato	nucleus	53.87	48.63
GSMUA_AchrUn_...	Banana	nucleus	46.69	48.15
CDX69282	Canola	nucleus	53.04	48.0
GSMUA_Achr1P26080_001	Banana	nucleus	48.9	47.2
CDY62228	Canola	nucleus	54.97	46.17
CDY29538	Canola	nucleus	54.97	46.06
Bra017809.1-P	Field mustard	nucleus	54.7	45.83
AT4G36920.1	Thale cress	nucleus	54.7	45.83
Bra011741.1-P	Field mustard	nucleus	54.42	45.5
CDY71179	Canola	nucleus	28.45	45.37
CDY71282	Canola	nucleus	28.73	44.64
GSMUA_Achr9P22540_001	Banana	nucleus	44.75	44.63
Solyc02g093150.2.1	Tomato	nucleus	54.97	44.62
GSMUA_Achr8P01980_001	Banana	nucleus	45.3	44.32
GSMUA_Achr4P12860_001	Banana	nucleus	47.51	43.32
KRH77030	Soybean	nucleus	58.56	42.23
PGSC0003DMT400016585	Potato	nucleus	54.7	41.68
GSMUA_Achr9P03060_001	Banana	nucleus	49.45	41.34
Os04t0649100-03	Rice	nucleus	52.49	41.3
VIT_07s0031g00220.t01	Wine grape	nucleus	57.46	41.03
PGSC0003DMT400010231	Potato	nucleus	58.01	40.94
GSMUA_Achr3P28340_001	Banana	nucleus	49.72	40.91
Zm00001d026448_P001	Maize	nucleus	46.41	40.68
GSMUA_Achr11P...	Banana	nucleus	48.34	40.51
KRH28441	Soybean	nucleus	55.25	40.32
GSMUA_Achr5P29290_001	Banana	nucleus	47.79	40.23
GSMUA_Achr6P02730_001	Banana	nucleus	18.23	40.0
GSMUA_AchrUn_...	Banana	nucleus	48.62	40.0
TraesCS2B01G542400.2	Wheat	nucleus	53.31	39.88
TraesCS2D01G515800.1	Wheat	nucleus	53.31	39.71
GSMUA_Achr10P...	Banana	nucleus	48.07	39.37
GSMUA_Achr1P09830_001	Banana	nucleus	49.45	39.17
KRH04560	Soybean	nucleus	57.46	39.1
KRH57898	Soybean	nucleus	57.18	38.84
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	17.68	38.79
Solyc02g064960.2.1	Tomato	nucleus	53.87	38.69
OQU82446	Sorghum	endoplasmic reticulum, vacuole	42.27	38.64
PGSC0003DMT400065501	Potato	nucleus	53.59	38.42
GSMUA_Achr6P33140_001	Banana	nucleus	49.45	37.53
GSMUA_Achr3P13180_001	Banana	nucleus	52.21	37.2
GSMUA_Achr6P34420_001	Banana	nucleus	47.79	36.34
GSMUA_Achr5P07270_001	Banana	nucleus	48.62	36.14
GSMUA_Achr8P21030_001	Banana	nucleus	49.17	35.46
Zm00001d002075_P001	Maize	nucleus	51.93	35.27
GSMUA_Achr9P04270_001	Banana	nucleus	44.48	34.18
GSMUA_Achr7P16540_001	Banana	mitochondrion	21.27	28.0
GSMUA_Achr6P30870_001	Banana	nucleus	18.78	23.05
GSMUA_AchrUn_...	Banana	nucleus	19.89	20.93

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr8G18550_001
EnsemblPlants:GSMUA_Achr8P18550_001	EnsemblPlants:GSMUA_Achr8T18550_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0TRK8	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF18	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002947EAC	SEG:seg	:	:	:	:

Description

Floral homeotic protein APETALA 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G18550_001]

Coordinates

chr8:-:22954300..22957725

Molecular Weight (calculated)

40990.9 Da

IEP (calculated)

9.752

GRAVY (calculated)

-0.824

Length

362 amino acids

Sequence
(BLAST)

001: MTFFKCGEAI WSRPLVFTYC LILTLLFHSN STKLGSIEPR ERERERERES SLPPAHWVGV QFGQSPQRSA TATETAVEAS QPAKKSRRGP RSRSSQYRGV
101: TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNMEDYEEDI KQMNNLTKEE FVHVLRRQST GFPRGSSKYR GVTLHKCGRW
201: EARMGQFLGK KYVYLGLFDT EVEAARAYDN AAIKCYGKDA VTNFDPSIYV EELDPSDGKK EHNLDLSLGR SNSDIDDPRG VDKGVGMDSK AKLANSSGDG
301: GGHHQQQQQQ QQRRQRQWNW GNGSSDRLRR FADMATPRVM ASSAAASSGF PQQTARPHLT WL

Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.