Factsheet for GSMUA_Achr6P30870_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074397	Potato	nucleus	32.54	50.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	27.12	48.48
GSMUA_Achr6P02730_001	Banana	nucleus	26.78	47.88
PGSC0003DMT400036707	Potato	nucleus	34.24	43.91
GSMUA_Achr7P16540_001	Banana	mitochondrion	25.08	26.91
GSMUA_AchrUn_...	Banana	nucleus	24.07	20.23
GSMUA_Achr8P01980_001	Banana	nucleus	24.07	19.19
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	23.05	18.78
GSMUA_Achr1P26080_001	Banana	nucleus	23.39	18.4
GSMUA_AchrUn_...	Banana	nucleus	21.36	18.31
GSMUA_Achr4P06100_001	Banana	nucleus	21.02	18.24
GSMUA_Achr10P...	Banana	nucleus	25.76	17.19
GSMUA_Achr9P22540_001	Banana	nucleus	20.34	16.53
GSMUA_Achr9P03060_001	Banana	nucleus	23.73	16.17
GSMUA_Achr4P12860_001	Banana	nucleus	21.69	16.12
GSMUA_Achr11P...	Banana	nucleus	23.39	15.97
GSMUA_Achr5P07270_001	Banana	nucleus	26.1	15.81
GSMUA_Achr6P33140_001	Banana	nucleus	25.42	15.72
GSMUA_AchrUn_...	Banana	nucleus	23.39	15.68
GSMUA_Achr5P29290_001	Banana	nucleus	22.71	15.58
GSMUA_Achr3P28340_001	Banana	nucleus	22.37	15.0
GSMUA_Achr1P09830_001	Banana	nucleus	23.05	14.88
GSMUA_Achr8P21030_001	Banana	nucleus	25.08	14.74
GSMUA_Achr6P34420_001	Banana	nucleus	23.73	14.71
GSMUA_Achr9P04270_001	Banana	nucleus	22.37	14.01
GSMUA_Achr3P13180_001	Banana	nucleus	24.07	13.98

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G30870_001
EnsemblPlants:GSMUA_Achr6P30870_001	EnsemblPlants:GSMUA_Achr6T30870_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0TBN2	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF20	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002955CA8	SEG:seg

Description

Putative AP2-like ethylene-responsive transcription factor At1g16060 [Source:GMGC_GENE;Acc:GSMUA_Achr6G30870_001]

Coordinates

chr6:+:30819398..30821884

Molecular Weight (calculated)

33235.1 Da

IEP (calculated)

9.369

GRAVY (calculated)

-0.662

Length

295 amino acids

Sequence
(BLAST)

001: MGKNQKKDTM LQGIHLVRSV AQFTVASRGI GGRDDSRLIC GIRTAGINPR TRKGNKACRA YGDEEAAARA YDLAALKYWG HNTILNFPIS TYQEELEKME
101: GQSKEEYIGS LRRKSSGFSR GVSRYRGVAR HHHSGKWEAR LGRVFGNKYL YLGTYANRLR VLLIRLSFKE RGCSVGELEE HIPFNGGSLM TILSPFTQPT
201: QEEAAAAYDM AAIEHRGLSA VTNFDLSRYS SSKSERRSPE RKSPPQPPPP YLSSSRPSKC SFPEDIQTYF ECQDSEFYLE GEDSNFWGST TFIDL

Best Arabidopsis Sequence Match ( AT1G16060.1 )
(BLAST)

001: MFIAVEVSPV MEDITRQSKK TSVENETGDD QSATSVVLKA KRKRRSQPRD APPQRSSVHR GVTRHRWTGR YEAHLWDKNS WNETQTKKGR QVYLGAYDEE
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC

Arabidopsis Description

ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.