Factsheet for GSMUA_Achr3P28340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P22540_001	Banana	nucleus	55.68	67.49
GSMUA_Achr4P06100_001	Banana	nucleus	47.27	61.18
GSMUA_Achr4P12860_001	Banana	nucleus	50.0	55.42
GSMUA_Achr1P26080_001	Banana	nucleus	44.32	52.0
AT5G67180.1	Thale cress	nucleus	41.14	51.42
CDY01432	Canola	nucleus	40.91	50.0
CDY12814	Canola	nucleus	40.91	49.86
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	40.91	49.72
Bra012139.1-P	Field mustard	nucleus	40.68	49.72
GSMUA_AchrUn_...	Banana	nucleus	38.41	48.15
GSMUA_Achr8P01980_001	Banana	nucleus	38.41	45.68
GSMUA_AchrUn_...	Banana	nucleus	44.77	44.77
GSMUA_Achr1P09830_001	Banana	nucleus	45.0	43.33
GSMUA_Achr5P29290_001	Banana	nucleus	41.14	42.09
GSMUA_Achr10P...	Banana	nucleus	42.27	42.08
GSMUA_Achr9P03060_001	Banana	nucleus	41.36	42.03
GSMUA_Achr3P13180_001	Banana	nucleus	48.41	41.93
GSMUA_Achr11P...	Banana	nucleus	39.55	40.28
GSMUA_Achr6P33140_001	Banana	nucleus	42.95	39.62
GSMUA_Achr6P34420_001	Banana	nucleus	40.68	37.6
GSMUA_Achr6P02730_001	Banana	nucleus	14.09	37.58
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	14.09	37.58
GSMUA_Achr5P07270_001	Banana	nucleus	40.45	36.55
GSMUA_Achr9P04270_001	Banana	nucleus	39.09	36.52
GSMUA_Achr8P21030_001	Banana	nucleus	40.45	35.46
GSMUA_Achr7P16540_001	Banana	mitochondrion	16.59	26.55
GSMUA_Achr6P30870_001	Banana	nucleus	15.0	22.37
GSMUA_AchrUn_...	Banana	nucleus	15.45	19.77

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G28340_001
EnsemblPlants:GSMUA_Achr3P28340_001	EnsemblPlants:GSMUA_Achr3T28340_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SIK0	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF18	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000295595B	SEG:seg	:	:	:	:

Description

Transcription factor APETALA2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G28340_001]

Coordinates

chr3:-:27632043..27637571

Molecular Weight (calculated)

48439.3 Da

IEP (calculated)

5.388

GRAVY (calculated)

-0.660

Length

440 amino acids

Sequence
(BLAST)

001: MEGVWDLNDA ASGAQDGSSP MASVDIGYRG DVVENHGFGS SAVVVEASEE REDDGVAGRI FGFSFSGRCG ESPSAGSKLA VVTQQLVAFG DAEGAGAGGS
101: CSAPQPRGHL IEDGIWQSSE PVGAGMATEA PPPLKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAY AAARAYDRAA IKFRGMDADI
201: NFRLDDYEED IKQASMGNLN KEEFVQVIRR QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKHVYLGL FDTEIEAARA YDKAAIKCNG TDAMTNFDPK
301: IYEDELGIQT NHVEHNLDLS LGRSGSGSKR NKLEIMDDEG SNVVDQQLPM AFESEWNRDT RLKRERERER ERERDRDREE GACMHVAFPA CTTPLPPSDA
401: ELSGVHSEGR QSHLDSDRDT ACCVGTDSCS LHLLIMRGFM

Best Arabidopsis Sequence Match ( AT4G36920.1 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.