Factsheet for GSMUA_Achr4P12860_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06100_001	Banana	nucleus	69.27	80.88
GSMUA_Achr9P22540_001	Banana	nucleus	51.13	55.92
GSMUA_Achr1P26080_001	Banana	nucleus	51.39	54.4
AT5G67180.1	Thale cress	nucleus	44.33	50.0
GSMUA_Achr3P28340_001	Banana	nucleus	55.42	50.0
CDY01432	Canola	nucleus	44.58	49.17
CDY12814	Canola	nucleus	44.58	49.03
Bra012139.1-P	Field mustard	nucleus	44.33	48.89
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	43.32	47.51
GSMUA_AchrUn_...	Banana	nucleus	41.56	47.01
GSMUA_Achr8P01980_001	Banana	nucleus	42.57	45.68
GSMUA_AchrUn_...	Banana	nucleus	48.61	43.86
GSMUA_Achr1P09830_001	Banana	nucleus	48.87	42.45
GSMUA_Achr3P13180_001	Banana	nucleus	53.4	41.73
GSMUA_Achr9P03060_001	Banana	nucleus	43.58	39.95
GSMUA_Achr5P29290_001	Banana	nucleus	42.57	39.3
GSMUA_Achr11P...	Banana	nucleus	41.31	37.96
GSMUA_Achr10P...	Banana	nucleus	42.07	37.78
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	15.37	36.97
GSMUA_Achr6P02730_001	Banana	nucleus	15.11	36.36
GSMUA_Achr6P33140_001	Banana	nucleus	43.58	36.27
GSMUA_Achr5P07270_001	Banana	nucleus	43.32	35.32
GSMUA_Achr9P04270_001	Banana	nucleus	41.81	35.24
GSMUA_Achr6P34420_001	Banana	nucleus	41.81	34.87
GSMUA_Achr8P21030_001	Banana	nucleus	42.32	33.47
GSMUA_Achr7P16540_001	Banana	mitochondrion	19.14	27.64
GSMUA_Achr6P30870_001	Banana	nucleus	16.12	21.69
GSMUA_AchrUn_...	Banana	nucleus	16.37	18.9

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G12860_001
EnsemblPlants:GSMUA_Achr4P12860_001	EnsemblPlants:GSMUA_Achr4T12860_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SNF1	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF18	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002949AB5	SEG:seg	:	:	:	:

Description

Floral homeotic protein APETALA 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G12860_001]

Coordinates

chr4:+:9547129..9549991

Molecular Weight (calculated)

44451.6 Da

IEP (calculated)

5.070

GRAVY (calculated)

-0.656

Length

397 amino acids

Sequence
(BLAST)

001: MEGAWDLNDA ASDEEDEKGK AAGATLAEAE NDDSGSSVVV IEASEEREDD SGAGRIFGFS ISGRRGEQTS AESAPAVVTH QFFPFDDVEE ARAGKSSGAA
101: PATRAHWAGV RVCHSSEPMV AGMVTEAPPP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GMYEPRFRQN SEAFERFDFV LDRVRNELLL
201: IACHVNVFVG GFDTAYAAAR AYDRAAIKFR GLDADINFSL DDYEEDIKQQ MGNVTKEEFV QVLRRQSTGY PRGSSKYRGV TLHKCGRWEA RMGQFFSKKY
301: VYLGLFETEI EAAQAYDKAA IKFNGKDAIT NFDPKIYKKE LDIQTEPPEH NLDLSLGGSG SKRNYIETID DEGTNIVDQL QQMASDSEWN RNMIPKV

Best Arabidopsis Sequence Match ( AT4G36920.1 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.