Factsheet for GSMUA_Achr7P16540_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 5
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P02730_001	Banana	nucleus	35.64	59.39
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	35.27	58.79
Os02t0747600-01	Rice	nucleus	51.27	41.72
KXG30761	Sorghum	nucleus	50.91	38.36
HORVU6Hr1G075640.13	Barley	nucleus	50.18	36.9
TraesCS6D01G285400.2	Wheat	nucleus	49.45	36.27
TraesCS6B01G334700.1	Wheat	nucleus	49.45	36.27
TraesCS6A01G306300.2	Wheat	nucleus	49.09	36.0
Zm00001d018050_P003	Maize	nucleus	42.18	30.05
GSMUA_Achr6P30870_001	Banana	nucleus	26.91	25.08
GSMUA_Achr4P06100_001	Banana	nucleus	27.27	22.06
GSMUA_AchrUn_...	Banana	nucleus	28.0	21.94
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	28.0	21.27
GSMUA_Achr8P01980_001	Banana	nucleus	28.36	21.08
GSMUA_Achr1P26080_001	Banana	nucleus	28.36	20.8
GSMUA_AchrUn_...	Banana	nucleus	25.45	20.35
GSMUA_Achr4P12860_001	Banana	nucleus	27.64	19.14
GSMUA_Achr9P22540_001	Banana	nucleus	24.73	18.73
GSMUA_Achr11P...	Banana	nucleus	28.0	17.82
GSMUA_Achr9P03060_001	Banana	nucleus	27.64	17.55
GSMUA_Achr10P...	Banana	nucleus	28.0	17.42
GSMUA_AchrUn_...	Banana	nucleus	27.64	17.27
GSMUA_Achr5P29290_001	Banana	nucleus	26.91	17.21
GSMUA_Achr1P09830_001	Banana	nucleus	27.64	16.63
GSMUA_Achr3P28340_001	Banana	nucleus	26.55	16.59
GSMUA_Achr6P33140_001	Banana	nucleus	28.0	16.14
GSMUA_Achr9P04270_001	Banana	nucleus	27.64	16.14
GSMUA_Achr5P07270_001	Banana	nucleus	27.64	15.61
GSMUA_Achr6P34420_001	Banana	nucleus	26.91	15.55
GSMUA_Achr8P21030_001	Banana	nucleus	28.36	15.54
GSMUA_Achr3P13180_001	Banana	nucleus	28.0	15.16

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G16540_001
EnsemblPlants:GSMUA_Achr7P16540_001	EnsemblPlants:GSMUA_Achr7T16540_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0TI41	PFAM:PF00847
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF47	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00029518D0
SEG:seg	:	:	:	:	:

Description

AP2-like ethylene-responsive transcription factor PLT2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G16540_001]

Coordinates

chr7:-:14712033..14715130

Molecular Weight (calculated)

31709.1 Da

IEP (calculated)

9.563

GRAVY (calculated)

-0.485

Length

275 amino acids

Sequence
(BLAST)

001: MLIPYHHVLL LWRRLNPQRP PLLKFVWMML PITSNKTCLE NKDCTEPANS TFRKVAIPRS SIHHGVTRHR WSGKYEAHLW DNTCRLEGRR CKGKQGRFFF
101: LFHLFILRLS SSGFWCFGCN AASEVMTHEK AARADDIAPL KYWGIGTKLN FQVCNYEKEL EDIKNMTREE CVTYVRRRSS CFSRGASVYR GVTRRQKDGR
201: WQAQIGRVAG NKDFYLGTFR TEEEAAEAYD IAAIKLCGMN AVTNFHISNY CEKGLGQLED EGRDPGGISP SQLKL

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.