Factsheet for GSMUA_Achr6P34420_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03060_001	Banana	nucleus	66.39	72.98
GSMUA_Achr5P29290_001	Banana	nucleus	61.13	67.67
GSMUA_Achr11P...	Banana	nucleus	56.3	62.04
GSMUA_AchrUn_...	Banana	nucleus	41.18	55.84
GSMUA_Achr10P...	Banana	nucleus	47.27	50.91
GSMUA_Achr8P01980_001	Banana	nucleus	39.29	50.54
GSMUA_Achr6P33140_001	Banana	nucleus	49.58	49.48
GSMUA_Achr4P06100_001	Banana	nucleus	34.87	48.82
KRG89074	Soybean	nucleus	45.17	47.99
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	36.34	47.79
Bra011939.1-P	Field mustard	nucleus	44.33	46.48
CDY04573	Canola	nucleus	44.33	46.48
CDY15760	Canola	nucleus	44.33	46.48
KRH22956	Soybean	nucleus	46.43	46.43
KRH67634	Soybean	nucleus	44.75	46.41
VIT_06s0004g03590.t01	Wine grape	nucleus	48.74	46.4
AT2G28550.3	Thale cress	nucleus	44.54	45.69
GSMUA_Achr5P07270_001	Banana	nucleus	46.64	45.59
CDX95767	Canola	nucleus	39.71	45.32
KRH24963	Soybean	nucleus	46.85	45.23
PGSC0003DMT400028706	Potato	nucleus	42.23	45.17
GSMUA_Achr8P21030_001	Banana	nucleus	47.48	45.02
PGSC0003DMT400071732	Potato	nucleus	43.07	44.86
GSMUA_Achr1P26080_001	Banana	nucleus	35.29	44.8
KRH10362	Soybean	nucleus	45.59	44.74
Bra000487.1-P	Field mustard	nucleus	38.45	43.88
Solyc10g084340.1.1	Tomato	nucleus	42.44	43.72
Solyc06g075510.2.1	Tomato	nucleus	43.28	43.46
CDX83296	Canola	nucleus	39.71	43.35
KRG95917	Soybean	mitochondrion	44.96	43.32
PGSC0003DMT400016881	Potato	nucleus	23.11	42.97
Solyc09g007260.2.1	Tomato	nucleus	40.76	42.64
VIT_08s0040g03180.t01	Wine grape	nucleus	44.33	42.63
GSMUA_Achr9P22540_001	Banana	nucleus	31.93	41.87
GSMUA_Achr4P12860_001	Banana	nucleus	34.87	41.81
GSMUA_Achr3P28340_001	Banana	nucleus	37.6	40.68
GSMUA_AchrUn_...	Banana	nucleus	37.4	40.45
GSMUA_Achr9P04270_001	Banana	nucleus	39.29	39.7
GSMUA_Achr1P09830_001	Banana	nucleus	36.97	38.51
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	13.24	38.18
GSMUA_Achr6P02730_001	Banana	nucleus	13.03	37.58
GSMUA_Achr3P13180_001	Banana	nucleus	39.08	36.61
GSMUA_Achr7P16540_001	Banana	mitochondrion	15.55	26.91
GSMUA_Achr6P30870_001	Banana	nucleus	14.71	23.73
GSMUA_AchrUn_...	Banana	nucleus	15.55	21.51

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G34420_001
EnsemblPlants:GSMUA_Achr6P34420_001	EnsemblPlants:GSMUA_Achr6T34420_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0TCN5	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000296392D	SEG:seg	:	:	:	:

Description

AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G34420_001]

Coordinates

chr6:-:33038340..33042206

Molecular Weight (calculated)

52605.2 Da

IEP (calculated)

6.722

GRAVY (calculated)

-0.570

Length

476 amino acids

Sequence
(BLAST)

001: MAHERLEAKI EFDLNVVSPC QSAAWASNSS EASSSAAAEE EDLRSTSGAA SLCFDNLRCP TEPAVVDDDG EDEGGVLPER RVVTWPLLPT TVVASTFQPP
101: VAANSSSTSR PGDLGFVERT VGCAAEAEAR VLLHRQQQQQ EVVKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI
201: KFRGLDADIN FDLNDYDEDL NQMRNLTKEE FVHILRRQST GFARGSSKYR GVTLHKCGRW EARMGQFLGK KYIYLGLFDS EIEAARAYDK AAIRWNGRVA
301: ITNFESSLYE GERLPEPENK AAFEDVDLSL RISQPNFHST KSDGNSTGTN FSHGSYEVPE TGNAQPDSPN HPAVVPGFAM TPQHPHLWNA YPGYFPRIEE
401: RGKEQRPEVG LRSLPGWAWH MHGPTLLPLV TSAASSGFSN ATTVAALPPL PAPPPPPISH HLPFPPPAST GYFLRH

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.