Factsheet for Bra000487.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83296	Canola	nucleus	97.84	93.58
Bra011939.1-P	Field mustard	nucleus	82.01	75.33
AT2G28550.3	Thale cress	nucleus	80.34	72.2
GSMUA_AchrUn_...	Banana	nucleus	43.65	51.85
GSMUA_Achr8P01980_001	Banana	nucleus	39.81	44.86
Solyc09g007260.2.1	Tomato	nucleus	47.0	43.08
KRH22956	Soybean	nucleus	48.2	42.23
GSMUA_Achr10P...	Banana	nucleus	44.6	42.08
PGSC0003DMT400071732	Potato	nucleus	45.8	41.79
Bra007123.1-P	Field mustard	nucleus	34.29	41.69
PGSC0003DMT400028706	Potato	nucleus	44.36	41.57
GSMUA_Achr9P03060_001	Banana	nucleus	43.17	41.57
Solyc10g084340.1.1	Tomato	nucleus	46.04	41.56
KRH10362	Soybean	nucleus	48.2	41.44
Bra012139.1-P	Field mustard	nucleus	35.49	41.11
GSMUA_Achr6P33140_001	Banana	nucleus	47.0	41.09
Bra002510.1-P	Field mustard	nucleus	43.88	40.49
Bra020262.1-P	Field mustard	nucleus	41.49	40.33
GSMUA_Achr11P...	Banana	nucleus	41.49	40.05
GSMUA_Achr5P29290_001	Banana	nucleus	41.25	40.0
Bra011741.1-P	Field mustard	nucleus	40.77	39.26
Bra017809.1-P	Field mustard	nucleus	40.29	38.89
GSMUA_Achr6P34420_001	Banana	nucleus	43.88	38.45
GSMUA_Achr5P07270_001	Banana	nucleus	44.6	38.19
GSMUA_Achr8P21030_001	Banana	nucleus	45.56	37.85
GSMUA_Achr9P04270_001	Banana	nucleus	41.25	36.52
Bra004641.1-P	Field mustard	nucleus	21.34	21.5
Bra000237.1-P	Field mustard	nucleus	21.1	19.01

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra000487
EnsemblPlants:Bra000487.1	EnsemblPlants:Bra000487.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4C8F9	PFAM:PF00847
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000253FFAD
SEG:seg	:	:	:	:	:

Description

AT2G28550 (E=2e-131) RAP2.7, TOE1 | RAP2.7 (RELATED TO AP2.7); DNA binding / transcription factor

Coordinates

chrA03:+:11361421..11363499

Molecular Weight (calculated)

45545.4 Da

IEP (calculated)

7.728

GRAVY (calculated)

-0.732

Length

417 amino acids

Sequence
(BLAST)

001: MMLDLNLDAD SPESTQYGDS NADRQTSDGS GNRVDESGTS TSSVINADAD DDSCSARAFT HSFDILKVGG GGGDESTASI SGVTKELFPV AGDCGKLRGW
101: SSRSWMDLSV GTKSVAPAPA PAQVRKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFTVGDYEED
201: MKQVQNLSKE EFVHILRRQS TGFSRGSSKY RGVTLHKYGK WETGMGQLLA KTAYNKAKIS SNGREAVANF EPSTFQKEIN SESGHDKLDL NLGISLSPGN
301: AAKQNGRLSH FPSNPYETPP GVSLTIDTEF MGKPVNTHLP YGSSDHRANF EENISEVGMM SNWGWHRPGQ TSTMRPQQPG AQPPQLFSVA AASSGFSNFR
401: QQPPSENASH GYFYPQF

Best Arabidopsis Sequence Match ( AT2G28550.1 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAINTNGR EAVTNFEMSS YQNEINSESN
301: NSEIDLNLGI SLSTGNAPKQ NGRLFHFPSN TYETQRGVSL RIDNEYMGKP VNTPLPYGSS DHRLYWNGAC PSYNNPAEGR ATEKRSEAEG MMSNWGWQRP
401: GQTSAVRPQP PGPQPPPLFS VAAASSGFSH FRPQPPNDNA TRGYFYPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.