CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10362	Soybean	nucleus	90.13	88.45
KRH24963	Soybean	nucleus	75.84	73.23
KRG89074	Soybean	nucleus	68.49	72.77
GSMUA_AchrUn_...	Banana	nucleus	44.33	60.11
GSMUA_Achr8P01980_001	Banana	nucleus	43.28	55.68
GSMUA_Achr10P...	Banana	nucleus	50.42	54.3
KRH67634	Soybean	nucleus	51.68	53.59
GSMUA_Achr6P33140_001	Banana	nucleus	52.52	52.41
CDY15760	Canola	nucleus	49.58	51.98
Bra011939.1-P	Field mustard	nucleus	49.37	51.76
CDY04573	Canola	nucleus	49.37	51.76
Solyc10g084340.1.1	Tomato	nucleus	50.21	51.73
PGSC0003DMT400028706	Potato	nucleus	48.32	51.69
PGSC0003DMT400071732	Potato	nucleus	49.16	51.2
GSMUA_Achr11P...	Banana	nucleus	46.43	51.16
AT2G28550.3	Thale cress	nucleus	49.58	50.86
Solyc09g007260.2.1	Tomato	nucleus	48.53	50.77
GSMUA_Achr9P03060_001	Banana	nucleus	46.01	50.58
KRG95917	Soybean	mitochondrion	51.89	50.0
GSMUA_Achr5P29290_001	Banana	nucleus	44.96	49.77
CDX95767	Canola	nucleus	43.49	49.64
GSMUA_Achr8P21030_001	Banana	nucleus	50.84	48.21
Bra000487.1-P	Field mustard	nucleus	42.23	48.2
CDX83296	Canola	nucleus	43.28	47.25
GSMUA_Achr5P07270_001	Banana	nucleus	47.9	46.82
GSMUA_Achr6P34420_001	Banana	nucleus	46.43	46.43
GSMUA_Achr9P04270_001	Banana	nucleus	40.55	40.98
KRH77030	Soybean	nucleus	42.65	40.44
KRH70384	Soybean	nucleus	35.08	40.14
KRH33335	Soybean	nucleus	33.4	38.5
KRH28441	Soybean	nucleus	39.92	38.31
KRH04560	Soybean	nucleus	42.44	37.97
KRH57898	Soybean	nucleus	42.44	37.9
KRG95240	Soybean	nucleus	20.59	23.45
KRH66909	Soybean	nucleus	20.17	22.7
KRH72011	Soybean	nucleus	21.01	22.37

Protein Annotations

EntrezGene:100777102	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:ACUP02008447	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_13G329700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1M4P4	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH22956
ProteinID:KRH22956	ProteinID:KRH22956.1	ProteinID:KRH22957.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233AD9F	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:42422213..42426774

Molecular Weight (calculated)

52688.5 Da

IEP (calculated)

7.654

GRAVY (calculated)

-0.574

Length

476 amino acids

Sequence
(BLAST)

001: MLDLNLTAES TQNDELLVLL DKFPEASSGT SNSSIVNAEG SSNEDSCSTR AGDVFTFNFG ILKVEAANDV VAAATKELFP VSSENWQGQS STSLFQARKS
101: LMDLSLDQQH GEVKVVQVQP QPKVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGLDADI NFNLVDYEED
201: LKQMKNLSKE EFVHILRRHS SGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE AVTNFEPSTY ESEMKPEAIN
301: EGGSHDLDLS LGIATPGHGP KENRGHLQFQ SIPYNMHPGR SSMMETNINS VIGDPSLKRL VVTEERPSVW NAAYSTFFPN LERAERMGTD PSKGVPNPNW
401: AWQTHGQVTD TPVPPFSTAA SSGFSISATF PSTAIFPTKS INSVPHSLCF TSPSTPGSNA PQFYNYYEVK SPQPPS

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.