CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89074	Soybean	nucleus	84.79	93.3
KRH22956	Soybean	nucleus	73.23	75.84
KRH10362	Soybean	nucleus	73.02	74.23
GSMUA_AchrUn_...	Banana	nucleus	45.03	63.25
GSMUA_Achr10P...	Banana	nucleus	50.1	55.88
KRH67634	Soybean	nucleus	51.93	55.77
GSMUA_Achr8P01980_001	Banana	nucleus	41.78	55.68
PGSC0003DMT400071732	Potato	nucleus	49.09	52.95
PGSC0003DMT400028706	Potato	nucleus	47.46	52.58
Solyc10g084340.1.1	Tomato	nucleus	48.68	51.95
Solyc09g007260.2.1	Tomato	nucleus	47.87	51.87
KRG95917	Soybean	mitochondrion	51.93	51.82
GSMUA_Achr6P33140_001	Banana	nucleus	49.9	51.57
GSMUA_Achr5P29290_001	Banana	nucleus	44.83	51.4
GSMUA_Achr9P03060_001	Banana	nucleus	44.62	50.81
GSMUA_Achr11P...	Banana	nucleus	44.02	50.23
GSMUA_Achr8P21030_001	Banana	nucleus	49.7	48.8
GSMUA_Achr5P07270_001	Banana	nucleus	47.26	47.84
GSMUA_Achr6P34420_001	Banana	nucleus	45.23	46.85
GSMUA_Achr9P04270_001	Banana	nucleus	40.77	42.68
KRH77030	Soybean	nucleus	43.0	42.23
KRH70384	Soybean	nucleus	33.87	40.14
KRH04560	Soybean	nucleus	43.0	39.85
KRH28441	Soybean	nucleus	39.96	39.72
KRH57898	Soybean	nucleus	42.8	39.59
KRH33335	Soybean	nucleus	32.25	38.5
KRG95240	Soybean	nucleus	20.28	23.92
KRH66909	Soybean	nucleus	19.68	22.93
KRH72011	Soybean	nucleus	20.08	22.15

Protein Annotations

EntrezGene:100788303	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:ACUP02007191	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_12G073300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1LR16	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH24963
ProteinID:KRH24963	ProteinID:KRH24963.1	EMBL:KT031086	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294A89E	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:5426189..5429694

Molecular Weight (calculated)

54104.6 Da

IEP (calculated)

7.560

GRAVY (calculated)

-0.716

Length

493 amino acids

Sequence
(BLAST)

001: MLDLNLNAEW TDSFSNGDSP LPSQKFPEGS RNQMAESGTS NSSVVNADGS SNGGGDEDSC STRADDVYTT FNFDILKVEG ANDVVTKELF PVMSEGAKGH
101: ATSSFSARNG FVDLSFDREG GDSEMKMLQP QNQPQTQTQT QQPAKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA
201: IKFRGVDADI NFNLSDYEDD LKQMKNLSKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE
301: AVTNFEPSTY EGEMKSAAIN EGGGQNLDLN LGIATPGPGP KENWGQLHFP SIPYNTHGGR SSKMETNVNS GIGNPSLKRM VVTEDRPSLW NGMSPNFFPN
401: GQERAERIGI DPSKGLPNWA WQTHGQVNAT PVPSFSAAAS SGFSISATFP STAIFPTSSM NSIPQSLCFT SSSSPTRNVS EYYYQVKPPQ APP

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.