CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66909	Soybean	nucleus	94.5	93.38
VIT_08s0007g08580.t01	Wine grape	nucleus	76.56	75.12
KRH72011	Soybean	nucleus	76.32	71.36
Solyc02g030210.2.1	Tomato	nucleus	56.46	67.24
Bra004641.1-P	Field mustard	nucleus	65.79	66.43
CDY23833	Canola	nucleus	64.11	63.06
CDY35402	Canola	nucleus	61.96	63.02
CDX79921	Canola	nucleus	64.11	62.18
CDY22537	Canola	nucleus	63.16	61.68
AT2G41710.4	Thale cress	nucleus	65.55	59.7
Bra000237.1-P	Field mustard	nucleus	64.11	57.88
GSMUA_AchrUn_...	Banana	nucleus	42.82	52.03
EES19464	Sorghum	nucleus	49.28	49.52
Os05t0389000-02	Rice	nucleus	48.56	47.76
TraesCS1D01G242800.1	Wheat	nucleus	47.61	47.16
TraesCS1B01G254300.1	Wheat	nucleus	47.61	47.16
TraesCS1A01G242800.1	Wheat	nucleus	47.13	47.13
HORVU1Hr1G056500.15	Barley	nucleus, plastid	47.13	43.78
Zm00001d038087_P003	Maize	mitochondrion	36.36	31.47
KRG89074	Soybean	nucleus	23.21	21.65
KRH67634	Soybean	nucleus	22.97	20.91
KRH22956	Soybean	nucleus	23.45	20.59
PGSC0003DMT400074397	Potato	nucleus	9.33	20.31
KRH24963	Soybean	nucleus	23.92	20.28
KRH10362	Soybean	nucleus	22.97	19.79
KRH70384	Soybean	nucleus	19.62	19.71
PGSC0003DMT400036707	Potato	nucleus	10.53	19.13
KRG95917	Soybean	mitochondrion	22.49	19.03
KRH77030	Soybean	nucleus	22.73	18.92
KRH33335	Soybean	nucleus	18.18	18.4
KRH04560	Soybean	nucleus	22.49	17.67
KRH57898	Soybean	nucleus	22.25	17.45
KRH28441	Soybean	nucleus	20.57	17.34

Protein Annotations

EntrezGene:100786651	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:ACUP02012094	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_19G138000	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1N8Z8	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:KRG95240	ProteinID:KRG95240	ProteinID:KRG95240.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF32	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233E8D4	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:39934472..39938001

Molecular Weight (calculated)

46520.5 Da

IEP (calculated)

9.057

GRAVY (calculated)

-0.749

Length

418 amino acids

Sequence
(BLAST)

001: MASSSSDPGK SAETSEAAVV VANDQLLLYR GLKKAKKERG CTAKERISKM PPCAAGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQVYLGAY
101: DDEEAAARAY DLAALKYWGP GTLINFPVTD YTRDLEEMQN VSREEYLASL RRKSSGFSRG LAKYRGLSSR WDPSYGRMSG SDYFNSMHYG AGDDSAAESE
201: YVSGFCIERK IDLTSHIKWW GSNKSRHSDA GTRLSEEKKL GSAGDICIEI KQLEQKVQPT APYQMPQLGR PQNEKKHRSS SVSALSILSQ SAAYKSLQEK
301: ASKTLENIID NDENENKNTI NKLDHGKAVE KPSNHDGGND RLDIATGMSG TMSLQRNVYP LTPFLSAPLL TAYNTVDPLV DPVLWTSLVP MLPAGLSHTA
401: EVTKTETSST YTMFRPEE

Best Arabidopsis Sequence Match ( AT2G41710.1 )
(BLAST)

001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.