CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G242800.1	Wheat	nucleus	82.21	81.82
TraesCS1B01G254300.1	Wheat	nucleus	82.45	81.28
TraesCS1D01G242800.1	Wheat	nucleus	82.21	81.04
Os05t0389000-02	Rice	nucleus	80.53	78.82
HORVU1Hr1G056500.15	Barley	nucleus, plastid	81.73	75.56
Zm00001d038087_P003	Maize	mitochondrion	81.73	70.39
GSMUA_AchrUn_...	Banana	nucleus	49.28	59.59
VIT_08s0007g08580.t01	Wine grape	nucleus	51.2	50.0
KRG95240	Soybean	nucleus	49.52	49.28
Solyc02g030210.2.1	Tomato	nucleus	41.35	49.0
KRH66909	Soybean	nucleus	49.76	48.94
Bra004641.1-P	Field mustard	nucleus	48.08	48.31
CDY35402	Canola	nucleus	46.63	47.2
CDY22537	Canola	nucleus	48.08	46.73
CDY23833	Canola	nucleus	47.36	46.35
CDX79921	Canola	nucleus	47.36	45.71
AT2G41710.4	Thale cress	nucleus	48.32	43.79
Bra000237.1-P	Field mustard	nucleus	48.32	43.41
KRH72011	Soybean	nucleus	46.39	43.18
KXG24410	Sorghum	mitochondrion	6.25	31.71
EER87748	Sorghum	nucleus	14.66	31.12
KXG24541	Sorghum	nucleus	18.75	24.61
KXG30761	Sorghum	nucleus	20.91	23.84
EER93202	Sorghum	nucleus	22.36	21.53
OQU77289	Sorghum	nucleus	21.88	20.82
PGSC0003DMT400036707	Potato	nucleus	10.82	19.57
PGSC0003DMT400074397	Potato	nucleus	8.89	19.27
OQU82446	Sorghum	endoplasmic reticulum, vacuole	17.79	18.69
EER96101	Sorghum	plastid	23.08	17.81
OQU76762	Sorghum	nucleus	18.99	16.74

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5YXG3
InterPro:DNA-bd_dom_sf	EnsemblPlants:EES19464	ProteinID:EES19464	ProteinID:EES19464.2	GO:GO:0000254	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016126	GO:GO:0055114
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF32	SMART:SM00380	EnsemblPlantsGene:SORBI_3009G124200	SUPFAM:SSF54171	UniParc:UPI00081AE170	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:47743018..47750375

Molecular Weight (calculated)

45552.8 Da

IEP (calculated)

8.996

GRAVY (calculated)

-0.458

Length

416 amino acids

Sequence
(BLAST)

001: MASPNPEAAA GLQTVAVAAG GGEGGSSSSL GAVAGAAAVS SSGELVPRRS LAVRKERVCT AKERISRMPP CAAGKRSSIY RGVTRHRWTG RYEAHLWDKS
101: TWNQNQNKKG KQVYLGAYDD EEAAARAYDL AALKYWGAGT QINFPVSDYA RDLEEMQMIS KEDYLVSLRR KSSAFYRGLP KYRGLLRQLH NSRWDTSLGL
201: GNDYMSLSCG KDIMLDGKFA GSFGLERKID LTNYIRWWLP KKTRQSDTSK TEEIADEIRA IESSMQQTEP YKLPSLGLGS PSKPSSVGLS ACSILSQSDA
301: FKSFLEKSTK LSEECTLSKE IVEGKTVASV PATGYDTGAI NINMNELLVQ RSTYSMAPVM PTPMKTTWSP ADPSVDPLFW SNFVLPSSQP VTMATITTTT
401: FTKNEVSSSD PFQSQE

Best Arabidopsis Sequence Match ( AT2G41710.1 )
(BLAST)

001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.