Factsheet for VIT_08s0007g08580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95240	Soybean	nucleus	75.12	76.56
KRH66909	Soybean	nucleus	75.82	76.36
Solyc02g030210.2.1	Tomato	nucleus	59.39	72.08
Bra004641.1-P	Field mustard	nucleus	67.84	69.81
CDY35402	Canola	nucleus	66.43	68.86
CDY23833	Canola	nucleus	66.43	66.59
CDY22537	Canola	nucleus	66.67	66.36
CDX79921	Canola	nucleus	66.2	65.43
AT2G41710.4	Thale cress	nucleus	67.84	62.96
KRH72011	Soybean	nucleus	65.96	62.86
Bra000237.1-P	Field mustard	nucleus	66.9	61.56
GSMUA_AchrUn_...	Banana	nucleus	45.54	56.4
EES19464	Sorghum	nucleus	50.0	51.2
Os05t0389000-02	Rice	nucleus	49.53	49.65
TraesCS1B01G254300.1	Wheat	nucleus	48.83	49.29
TraesCS1D01G242800.1	Wheat	nucleus	48.83	49.29
TraesCS1A01G242800.1	Wheat	nucleus	48.36	49.28
HORVU1Hr1G056500.15	Barley	nucleus, plastid	48.36	45.78
Zm00001d038087_P003	Maize	mitochondrion	37.32	32.92
VIT_04s0023g00970.t01	Wine grape	nucleus	6.81	24.79
PGSC0003DMT400074397	Potato	nucleus	9.86	21.88
PGSC0003DMT400036707	Potato	nucleus	11.27	20.87
VIT_13s0019g03550.t01	Wine grape	nucleus	23.0	19.72
VIT_06s0004g03590.t01	Wine grape	nucleus	23.0	19.6
VIT_08s0040g03180.t01	Wine grape	nucleus	22.07	18.99
VIT_07s0031g00220.t01	Wine grape	nucleus	22.07	18.54

Protein Annotations

EntrezGene:100248718	wikigene:100248718	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:AM427820	InterPro:AP2-like_transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CAN82222	ProteinID:CAN82222.1	ProteinID:CCB55124	ProteinID:CCB55124.1
ncoils:Coil	InterPro:DNA-bd_dom_sf	UniProt:F6HKW7	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100248718
wikigene:LOC100248718	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF32
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002109334	ArrayExpress:VIT_08s0007g08580	EnsemblPlantsGene:VIT_08s0007g08580	EnsemblPlants:VIT_08s0007g08580.t01
unigene:Vvi.6170	RefSeq:XP_002284093	RefSeq:XP_002284093.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:21956912..21961500

Molecular Weight (calculated)

47010.7 Da

IEP (calculated)

8.785

GRAVY (calculated)

-0.834

Length

426 amino acids

Sequence
(BLAST)

001: MASSSSEPGL KPESGGGSGS GGGETSEAAV ASDQLLLYRG LKKAKKERGS TAKERISKMP PCAAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQGAYDDEE AAARAYDLAA LKYWGPGTLI NFPVTDYARD LEEMQNVSRE EYLASLRRKS SGFSRGISKY RGLASNRWDQ PFGRIAGQEY FNNMHYGMGD
201: DAAAESELFG GFCMERKIDL TGYIKWWGPN KTRQSDSLAK SSEETKQGSG EDIGSELKTL EWAIQPTEPY QMPRLGLPHE GKKQKSSTVS ALSILSRSAA
301: YKSLEEKASK KQENNTENDE NENKNKINKM DHGKAVEKST SHDSGSERLG VALGLGGEFS IQRSVYPLTP LLSAPLLTNY SSVDPLADPI LWTSLVPALP
401: TGLPRTAEVT KTETSSTYTF FHQEEQ

Best Arabidopsis Sequence Match ( AT2G41710.1 )
(BLAST)

001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.