Factsheet for VIT_07s0031g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77030	Soybean	nucleus	69.03	69.72
KRH04560	Soybean	nucleus	70.41	67.11
KRH57898	Soybean	nucleus	70.41	66.98
PGSC0003DMT400010231	Potato	nucleus	66.08	65.3
Solyc02g093150.2.1	Tomato	nucleus	57.0	64.8
CDX69282	Canola	nucleus	50.3	63.75
Bra011741.1-P	Field mustard	nucleus	53.06	62.12
TraesCS2A01G514200.1	Wheat	nucleus	44.58	61.25
AT4G36920.1	Thale cress	nucleus	51.87	60.88
CDY62228	Canola	nucleus	51.48	60.56
CDY29538	Canola	nucleus	51.28	60.19
Bra017809.1-P	Field mustard	nucleus	51.08	59.95
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	41.03	57.46
CDY71179	Canola	nucleus	25.44	56.83
CDY71282	Canola	nucleus	26.04	56.65
Os04t0649100-03	Rice	nucleus	49.11	54.13
TraesCS2D01G515800.1	Wheat	nucleus	48.13	50.21
Zm00001d026448_P001	Maize	nucleus	40.83	50.12
TraesCS2B01G542400.2	Wheat	nucleus	47.73	50.0
OQU82446	Sorghum	endoplasmic reticulum, vacuole	37.08	47.47
Zm00001d002075_P001	Maize	nucleus	48.32	45.97
VIT_06s0004g03590.t01	Wine grape	nucleus	44.18	44.8
VIT_13s0019g03550.t01	Wine grape	nucleus	42.41	43.26
VIT_08s0040g03180.t01	Wine grape	nucleus	40.83	41.82
VIT_04s0023g00970.t01	Wine grape	nucleus	8.48	36.75
VIT_08s0007g08580.t01	Wine grape	nucleus	18.54	22.07

Protein Annotations

EntrezGene:100268051	wikigene:100268051	MapMan:15.5.7.3	Gene3D:3.30.730.10	ProteinID:ACO52508	ProteinID:ACO52508.1
EntrezGene:AP2	wikigene:AP2	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CCB47049
ProteinID:CCB47049.1	InterPro:DNA-bd_dom_sf	UniProt:F6H4H7	EMBL:FJ809943	EMBL:FN595233	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0010073	GO:GO:0010093	GO:GO:0048316	GO:GO:0048481
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF18	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001983B3C	ArrayExpress:VIT_07s0031g00220	EnsemblPlantsGene:VIT_07s0031g00220
EnsemblPlants:VIT_07s0031g00220.t01	unigene:Vvi.11862	RefSeq:XP_010652782.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:16437157..16440718

Molecular Weight (calculated)

56304.2 Da

IEP (calculated)

6.990

GRAVY (calculated)

-0.809

Length

507 amino acids

Sequence
(BLAST)

001: MWDLNDSPDQ RRDDESEGCS SQKTSVDSID DKGKRVGSVS NENSSSSAVV IEDGSDEEDG ERGQRKRSSK IFGFSVTHED EGEPPVTRQF FPMEESEMGT
101: TSCGGAAAFP RAHWVGVKFC QSEPLNTAGV ATAKSLEASQ PLKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK
201: FRGVEADINF SLEDYEEDLK QMGNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE IEAARAYDKA AIKCNGKEAV
301: TNFDPSIYEN ELNSSGNAAD HNLDLSLGGS ASKQNNLELG DDSQVVTMDQ HSVGMSFEAD WRSRGFRPKQ EACKSDGDAL RRNGYNEMET MQLLSHTHLQ
401: SPAALKPGEM YRYGQFRRAG ETQMLHILPP QLSSPNYQIQ FPSSSNGGRI AVNGGDLSLA TNHQQWQSGP PQLFATAAAS SGFPPQMIRP NQQWPQKNGF
501: HSLIRPS

Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.