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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G514200.1 Wheat nucleus 66.74 83.2
Zm00001d026448_P001 Maize nucleus 69.78 77.72
TraesCS2D01G515800.1 Wheat nucleus 81.74 77.37
TraesCS2B01G542400.2 Wheat nucleus 81.09 77.07
Zm00001d002075_P001 Maize nucleus 80.0 69.04
OQU82446 Sorghum endoplasmic reticulum, vacuole 59.13 68.69
Solyc03g044300.2.1 Tomato nucleus 47.17 54.11
CDX69282 Canola nucleus 46.74 53.75
AT4G36920.1 Thale cress nucleus 49.35 52.55
GSMUA_Achr8P18550_001 Banana endoplasmic reticulum, nucleus 41.3 52.49
Bra011741.1-P Field mustard nucleus 49.35 52.42
CDY71282 Canola nucleus 26.3 51.93
CDY71179 Canola nucleus 25.43 51.54
CDY62228 Canola nucleus 48.26 51.51
Bra017809.1-P Field mustard nucleus 48.04 51.16
CDY29538 Canola nucleus 48.04 51.16
VIT_07s0031g00220.t01 Wine grape nucleus 54.13 49.11
Solyc02g093150.2.1 Tomato nucleus 47.61 49.1
PGSC0003DMT400016585 Potato nucleus 48.04 46.53
PGSC0003DMT400010231 Potato nucleus 51.52 46.2
Os03t0818800-01 Rice nucleus 42.83 45.39
KRH28441 Soybean nucleus 48.26 44.76
Os07t0235800-01 Rice nucleus 41.74 44.04
Solyc02g064960.2.1 Tomato nucleus 48.04 43.85
PGSC0003DMT400065501 Potato nucleus 48.04 43.76
Os05t0121600-01 Rice nucleus 44.78 40.23
Os06t0639200-01 Rice nucleus 29.13 40.12
Os08t0171100-01 Rice cytosol, nucleus 4.35 33.9
Os02t0747600-01 Rice nucleus 20.43 27.81
Os05t0389000-02 Rice nucleus 20.22 21.88
Os06t0658000-00 Rice endoplasmic reticulum, extracellular 6.09 15.3
Protein Annotations
MapMan:15.5.7.3Gene3D:3.30.730.10EntrezGene:9269072UniProt:A0A0N7KJT8InterPro:AP2-like_transcript_factorInterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sfProteinID:BAS91337.1InterPro:DNA-bd_dom_sfGO:GO:0000003GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007275GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009653GO:GO:0009791GO:GO:0009908GO:GO:0009987
GO:GO:0010073GO:GO:0010093GO:GO:0048316GO:GO:0048481InterPro:IPR001471InterPro:IPR036955
EnsemblPlantsGene:Os04g0649100EnsemblPlants:Os04t0649100-03PFAM:PF00847PFscan:PS51032PANTHER:PTHR32467PANTHER:PTHR32467:SF18
SMART:SM00380SUPFAM:SSF54171UniParc:UPI0001C7E11BRefSeq:XP_015636848.1SEG:seg:
Description
SHATTERING ABORTION 1Similar to cDNA clone:J023121E19, full insert sequence. (Os04t0649100-01);Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os04t0649100-02);APETALA2 transcription factor, Seed shattering through abscission zone (AZ) development (Os04t0649100-03)
Coordinates
chr4:+:33071970..33074598
Molecular Weight (calculated)
48502.0 Da
IEP (calculated)
7.046
GRAVY (calculated)
-0.537
Length
460 amino acids
Sequence
(BLAST)
001: MWDLNDSPAA EAAPPPLSPS ADDSGASSSS AAAVVEIPDD ADDDSAAVVV VTRQFFPPAV PGGGGDPAPG NARAGWLRLA GAAPPVAATG PAASAAVSKK
101: SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFSLED YEDDLKQMSN LTKEEFVHVL RRQSTGFPRG
201: SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEEEAA RAYDRAAIKC NGKDAVTNFD PSIYAGEFEP PAAATGDAAE HNLDLSLGSS AGSKRGNVDG
301: GGDDEITGGG GGGAGSDQRV PMAFDLDWQT AAARSTKAKF DQNSNHPQMP PVLQVTHLPF SPRHHHQFLS NGDPGTAGGL SLTIGAGMAG HWPPQQQQGW
401: GNAGGMSWPH PPHPPPPPTN AAAAATATAA AASSRFPPYI ATQASTWLQK NGFHSLTRPT
Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)
001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS
Arabidopsis Description
AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.