Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2A01G514200.1 | Wheat | nucleus | 66.74 | 83.2 |
Zm00001d026448_P001 | Maize | nucleus | 69.78 | 77.72 |
TraesCS2D01G515800.1 | Wheat | nucleus | 81.74 | 77.37 |
TraesCS2B01G542400.2 | Wheat | nucleus | 81.09 | 77.07 |
Zm00001d002075_P001 | Maize | nucleus | 80.0 | 69.04 |
OQU82446 | Sorghum | endoplasmic reticulum, vacuole | 59.13 | 68.69 |
Solyc03g044300.2.1 | Tomato | nucleus | 47.17 | 54.11 |
CDX69282 | Canola | nucleus | 46.74 | 53.75 |
AT4G36920.1 | Thale cress | nucleus | 49.35 | 52.55 |
GSMUA_Achr8P18550_001 | Banana | endoplasmic reticulum, nucleus | 41.3 | 52.49 |
Bra011741.1-P | Field mustard | nucleus | 49.35 | 52.42 |
CDY71282 | Canola | nucleus | 26.3 | 51.93 |
CDY71179 | Canola | nucleus | 25.43 | 51.54 |
CDY62228 | Canola | nucleus | 48.26 | 51.51 |
Bra017809.1-P | Field mustard | nucleus | 48.04 | 51.16 |
CDY29538 | Canola | nucleus | 48.04 | 51.16 |
VIT_07s0031g00220.t01 | Wine grape | nucleus | 54.13 | 49.11 |
Solyc02g093150.2.1 | Tomato | nucleus | 47.61 | 49.1 |
PGSC0003DMT400016585 | Potato | nucleus | 48.04 | 46.53 |
PGSC0003DMT400010231 | Potato | nucleus | 51.52 | 46.2 |
Os03t0818800-01 | Rice | nucleus | 42.83 | 45.39 |
KRH28441 | Soybean | nucleus | 48.26 | 44.76 |
Os07t0235800-01 | Rice | nucleus | 41.74 | 44.04 |
Solyc02g064960.2.1 | Tomato | nucleus | 48.04 | 43.85 |
PGSC0003DMT400065501 | Potato | nucleus | 48.04 | 43.76 |
Os05t0121600-01 | Rice | nucleus | 44.78 | 40.23 |
Os06t0639200-01 | Rice | nucleus | 29.13 | 40.12 |
Os08t0171100-01 | Rice | cytosol, nucleus | 4.35 | 33.9 |
Os02t0747600-01 | Rice | nucleus | 20.43 | 27.81 |
Os05t0389000-02 | Rice | nucleus | 20.22 | 21.88 |
Os06t0658000-00 | Rice | endoplasmic reticulum, extracellular | 6.09 | 15.3 |
Protein Annotations
MapMan:15.5.7.3 | Gene3D:3.30.730.10 | EntrezGene:9269072 | UniProt:A0A0N7KJT8 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom |
InterPro:AP2/ERF_dom_sf | ProteinID:BAS91337.1 | InterPro:DNA-bd_dom_sf | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 |
GO:GO:0010073 | GO:GO:0010093 | GO:GO:0048316 | GO:GO:0048481 | InterPro:IPR001471 | InterPro:IPR036955 |
EnsemblPlantsGene:Os04g0649100 | EnsemblPlants:Os04t0649100-03 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF18 |
SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0001C7E11B | RefSeq:XP_015636848.1 | SEG:seg | : |
Description
SHATTERING ABORTION 1Similar to cDNA clone:J023121E19, full insert sequence. (Os04t0649100-01);Pathogenesis-related transcriptional factor and ERF domain containing protein. (Os04t0649100-02);APETALA2 transcription factor, Seed shattering through abscission zone (AZ) development (Os04t0649100-03)
Coordinates
chr4:+:33071970..33074598
Molecular Weight (calculated)
48502.0 Da
IEP (calculated)
7.046
GRAVY (calculated)
-0.537
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MWDLNDSPAA EAAPPPLSPS ADDSGASSSS AAAVVEIPDD ADDDSAAVVV VTRQFFPPAV PGGGGDPAPG NARAGWLRLA GAAPPVAATG PAASAAVSKK
101: SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFSLED YEDDLKQMSN LTKEEFVHVL RRQSTGFPRG
201: SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEEEAA RAYDRAAIKC NGKDAVTNFD PSIYAGEFEP PAAATGDAAE HNLDLSLGSS AGSKRGNVDG
301: GGDDEITGGG GGGAGSDQRV PMAFDLDWQT AAARSTKAKF DQNSNHPQMP PVLQVTHLPF SPRHHHQFLS NGDPGTAGGL SLTIGAGMAG HWPPQQQQGW
401: GNAGGMSWPH PPHPPPPPTN AAAAATATAA AASSRFPPYI ATQASTWLQK NGFHSLTRPT
101: SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFSLED YEDDLKQMSN LTKEEFVHVL RRQSTGFPRG
201: SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEEEAA RAYDRAAIKC NGKDAVTNFD PSIYAGEFEP PAAATGDAAE HNLDLSLGSS AGSKRGNVDG
301: GGDDEITGGG GGGAGSDQRV PMAFDLDWQT AAARSTKAKF DQNSNHPQMP PVLQVTHLPF SPRHHHQFLS NGDPGTAGGL SLTIGAGMAG HWPPQQQQGW
401: GNAGGMSWPH PPHPPPPPTN AAAAATATAA AASSRFPPYI ATQASTWLQK NGFHSLTRPT
001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS
Arabidopsis Description
AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.