CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77030	Soybean	nucleus	93.35	92.23
KRH04560	Soybean	nucleus	78.83	73.5
KRH57898	Soybean	nucleus	78.43	72.98
CDX69282	Canola	nucleus	48.79	60.5
AT4G36920.1	Thale cress	nucleus	51.41	59.03
Bra011741.1-P	Field mustard	nucleus	51.41	58.89
CDY62228	Canola	nucleus	50.81	58.47
CDY29538	Canola	nucleus	50.2	57.64
Bra017809.1-P	Field mustard	nucleus	50.0	57.41
CDY71282	Canola	nucleus	26.81	57.08
CDY71179	Canola	nucleus	26.01	56.83
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	40.32	55.25
TraesCS2A01G514200.1	Wheat	nucleus	40.93	55.01
Os04t0649100-03	Rice	nucleus	44.76	48.26
Zm00001d026448_P001	Maize	nucleus	38.71	46.49
TraesCS2B01G542400.2	Wheat	nucleus	43.55	44.63
OQU82446	Sorghum	endoplasmic reticulum, vacuole	35.48	44.44
TraesCS2D01G515800.1	Wheat	nucleus	43.55	44.44
KRG89074	Soybean	nucleus	38.71	42.86
Zm00001d002075_P001	Maize	nucleus	44.15	41.09
KRH67634	Soybean	nucleus	37.1	40.09
KRH24963	Soybean	nucleus	39.72	39.96
KRH22956	Soybean	nucleus	38.31	39.92
KRH10362	Soybean	nucleus	38.1	38.97
KRG95917	Soybean	mitochondrion	37.3	37.45
KRH70384	Soybean	nucleus	27.62	32.93
KRH33335	Soybean	nucleus	27.02	32.45
KRG95240	Soybean	nucleus	17.34	20.57
KRH66909	Soybean	nucleus	16.94	19.86
KRH72011	Soybean	nucleus	16.94	18.79

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A0R0HKT1	EMBL:ACUP02006752	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_11G053800	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0010073	GO:GO:0010093	GO:GO:0048316	GO:GO:0048481	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:KRH28441	ProteinID:KRH28441	ProteinID:KRH28441.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF18	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0006EDCA0A	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:4048455..4052090

Molecular Weight (calculated)

54214.5 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.808

Length

496 amino acids

Sequence
(BLAST)

001: MWNLNDSPDQ RKDYESEGCS SSLNDDKGKR VGSASNSSSS AVVVEDGSEE EDSERGGSRT LDKKTNKIFG FAVAHDDSDH PPVTHQFFPV EDSELPVSAA
101: AAGSGGGGGG SSFPRAHWVG VKFCQSETPG AGKAVTVSEP MKKSRRGPRS RSSQYRGVTF YRRLVDGNLI YGGFDTAHAA ARAYDRAAIK FRGVEADINF
201: NIEDYEEDLK QMTNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE IEAARAYDKA AIKCNGKEAV TNFDPSIYDS
301: ELNSESSGGV AADHNLDLSL GNSSSKHNNS QTSGNHFANS ATDQHMPPES NWRNGGSKPK VHLVNILPKP CGRSNIEAYG HGESETLRLL SQTHLQSPTN
401: KEMHRYGPYR SPAEPQKPHN FAHHLHQPSF HVPSSSSNGG RIGSDLSLSM SDQQQWQAGP PHLLATAAAS SGFPQQIRPS QGWLQKNGFH SLMRPS

Best Arabidopsis Sequence Match ( AT4G36920.1 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.