CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28441	Soybean	nucleus	92.23	93.35
KRH04560	Soybean	nucleus	79.68	75.19
KRH57898	Soybean	nucleus	79.48	74.86
VIT_07s0031g00220.t01	Wine grape	nucleus	69.72	69.03
PGSC0003DMT400010231	Potato	nucleus	61.16	59.84
Solyc02g093150.2.1	Tomato	nucleus	52.79	59.42
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	42.23	58.56
KRG89074	Soybean	nucleus	41.24	46.21
KRH67634	Soybean	nucleus	40.04	43.79
KRH24963	Soybean	nucleus	42.23	43.0
KRH22956	Soybean	nucleus	40.44	42.65
KRH10362	Soybean	nucleus	40.24	41.65
KRG95917	Soybean	mitochondrion	40.24	40.89
KRH70384	Soybean	nucleus	30.48	36.78
KRH33335	Soybean	nucleus	29.88	36.32
KRG95240	Soybean	nucleus	18.92	22.73
KRH66909	Soybean	nucleus	18.53	21.99
KRH72011	Soybean	nucleus	18.53	20.81

Protein Annotations

EntrezGene:100801975	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:ACUP02000653	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_01G188400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K7K4M6	EnsemblPlants:KRH77030
ProteinID:KRH77030	ProteinID:KRH77030.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF18	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002950913	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:52343950..52346901

Molecular Weight (calculated)

55640.4 Da

IEP (calculated)

8.178

GRAVY (calculated)

-0.815

Length

502 amino acids

Sequence
(BLAST)

001: MWDLNDSPDQ RKDYESEGCS SSLYDDKGKR VASVSNSSSS AVVVEDGSEE EDSERGGSRT LDNKKTNKIF GFSVAHDDSD HPPVTHQFFP VEDSELPVTA
101: AAAAAGSSFP RAHWVGVKFC QSETPGAGKA VKVSEPMKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGVE
201: ADINFNIEDY EEDLKQMTNL TKEEFVHVLR RQSTGFPRGS SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDTEIEAAR AYDKAAIKCN GKEAVTNFDP
301: SIYDGELNSE SSGGVAADHN LDLSLGNLIS KHSNSQSSRN HFPNSATDQH MPPESNWQSG GSKPKVHLVN ILPKPCGRSN MEAYGQGESE TLRLLSQTHL
401: QSPTTKEMHR YGPYRSPAEP QMPHNFAHHL HQPSFHVPSS SSNRGRIGSD LSLSMSDQQQ WQQAGPPHLL ATAAASSGFP QQIRPSQGWL QKNGFHSLMR
501: PS

Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.