CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95240	Soybean	nucleus	71.36	76.32
KRH66909	Soybean	nucleus	71.81	75.89
VIT_08s0007g08580.t01	Wine grape	nucleus	62.86	65.96
Solyc02g030210.2.1	Tomato	nucleus	47.43	60.4
Bra004641.1-P	Field mustard	nucleus	55.93	60.39
CDY35402	Canola	nucleus	53.02	57.66
CDY23833	Canola	nucleus	54.81	57.65
CDY22537	Canola	nucleus	54.36	56.78
CDX79921	Canola	nucleus	54.59	56.61
AT2G41710.4	Thale cress	nucleus	56.6	55.12
Bra000237.1-P	Field mustard	nucleus	54.59	52.7
GSMUA_AchrUn_...	Banana	nucleus	39.15	50.87
EES19464	Sorghum	nucleus	43.18	46.39
Os05t0389000-02	Rice	nucleus	42.06	44.24
TraesCS1A01G242800.1	Wheat	nucleus	41.16	44.02
TraesCS1D01G242800.1	Wheat	nucleus	41.39	43.84
TraesCS1B01G254300.1	Wheat	nucleus	41.39	43.84
HORVU1Hr1G056500.15	Barley	nucleus, plastid	42.06	41.78
Zm00001d038087_P003	Maize	mitochondrion	33.78	31.26
KRG89074	Soybean	nucleus	21.48	21.43
KRH22956	Soybean	nucleus	22.37	21.01
KRH67634	Soybean	nucleus	21.48	20.91
PGSC0003DMT400074397	Potato	nucleus	8.95	20.83
KRH10362	Soybean	nucleus	21.92	20.21
KRH24963	Soybean	nucleus	22.15	20.08
KRG95917	Soybean	mitochondrion	21.03	19.03
KRH77030	Soybean	nucleus	20.81	18.53
KRH70384	Soybean	nucleus	17.0	18.27
PGSC0003DMT400036707	Potato	nucleus	9.4	18.26
KRH33335	Soybean	nucleus	16.11	17.43
KRH04560	Soybean	nucleus	20.36	17.11
KRH28441	Soybean	nucleus	18.79	16.94
KRH57898	Soybean	nucleus	20.13	16.89

Protein Annotations

EntrezGene:100795084	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:ACUP02001141	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_02G185200	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1JGA6	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:KRH72011	ProteinID:KRH72011	ProteinID:KRH72011.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF32	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233734F	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:32607458..32613210

Molecular Weight (calculated)

50167.7 Da

IEP (calculated)

9.060

GRAVY (calculated)

-0.686

Length

447 amino acids

Sequence
(BLAST)

001: METHPHYISK AFSLTNVRVR LGLVWFTSMA SSSSDPGKSE ADGSSETLSE ATAAAKDGQL RMKKAKKERV CTAKERISKM PPCAVGKRSS IYRGVTRHRW
101: TGRYEAHLWD KSTWNQNQNK KGKQVYLGAY DDEEAAARAY DLAALRYWGP SALINFPVTD YARDLEEMQN VSREEYLASL RRKSSGFSRG LSKYRGLSSR
201: WNPTYGRMAG SDYFNSRYYG EDSAAETKYL SSFCIERKID LTSYIKWWGS NKSQQPDSRV RFSDVRKHGF AGDFCIEHKT LEQNVHPSEP YQLLALGMPC
301: ERIKHEHSSV SALSIVLQSA AYKNLQQRAS TRQENSNYND ENENKDTIIN KLDHGKAAEK SLNNDGGNER LDIAMGMSGS LPLQRNVYPP ASLLIAPLLT
401: AYNTVDPSVD PVLWTPQVPI LSAGLSGVAE VAKTETSSTY TIFQPDE

Best Arabidopsis Sequence Match ( AT2G41710.1 )
(BLAST)

001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.