Factsheet for AT2G41710.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004641.1-P	Field mustard	nucleus	79.96	88.65
CDY35402	Canola	nucleus	76.69	85.64
CDY22537	Canola	nucleus	78.43	84.11
CDY23833	Canola	nucleus	77.78	84.0
CDX79921	Canola	nucleus	77.34	82.37
Bra000237.1-P	Field mustard	nucleus	78.65	77.97
VIT_08s0007g08580.t01	Wine grape	nucleus	62.96	67.84
KRG95240	Soybean	nucleus	59.7	65.55
KRH66909	Soybean	nucleus	59.26	64.3
Solyc02g030210.2.1	Tomato	nucleus	46.41	60.68
KRH72011	Soybean	nucleus	55.12	56.6
GSMUA_AchrUn_...	Banana	nucleus	40.52	54.07
Os05t0389000-02	Rice	nucleus	45.1	48.71
EES19464	Sorghum	nucleus	43.79	48.32
TraesCS1B01G254300.1	Wheat	nucleus	44.01	47.87
TraesCS1D01G242800.1	Wheat	nucleus	44.01	47.87
TraesCS1A01G242800.1	Wheat	nucleus	43.57	47.85
HORVU1Hr1G056500.15	Barley	nucleus, plastid	43.57	44.44
Zm00001d038087_P003	Maize	mitochondrion	32.46	30.85
AT5G67180.1	Thale cress	nucleus	18.08	23.58
AT2G39250.1	Thale cress	nucleus	15.25	21.54
AT2G28550.3	Thale cress	nucleus	21.13	20.91
AT3G54990.1	Thale cress	nucleus	15.69	20.81
PGSC0003DMT400074397	Potato	nucleus	8.5	20.31
AT4G36920.1	Thale cress	nucleus	18.95	20.14
PGSC0003DMT400036707	Potato	nucleus	8.93	17.83
AT5G60120.2	Thale cress	nucleus	19.17	17.36

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	EntrezGene:818770	UniProt:A0A1P8B1K7	ProteinID:ANM62789.1	InterPro:AP2-like_transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ArrayExpress:AT2G41710	EnsemblPlantsGene:AT2G41710	RefSeq:AT2G41710	TAIR:AT2G41710
RefSeq:AT2G41710-TAIR-G	EnsemblPlants:AT2G41710.4	Unigene:At.42968	ncoils:Coil	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
RefSeq:NP_001324919.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF32
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000848CB83	SEG:seg	:	:

Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]

Coordinates

chr2:-:17400260..17403050

Molecular Weight (calculated)

50524.0 Da

IEP (calculated)

7.854

GRAVY (calculated)

-0.667

Length

459 amino acids

Sequence
(BLAST)

001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVRSHI SIEPETSEVT TTHLPYVIFF GSLSSAGDKD RDQLFHVQLP PTREMSRSL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.