Factsheet for AT2G39250.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G54990.1	Thale cress	nucleus	65.54	61.56
AT5G67180.1	Thale cress	nucleus	35.08	32.39
AT4G36920.1	Thale cress	nucleus	35.69	26.85
OQU77289	Sorghum	nucleus	35.69	26.54
VIT_13s0019g03550.t01	Wine grape	nucleus	40.31	26.36
AT2G28550.3	Thale cress	nucleus	37.54	26.29
Zm00001d010987_P001	Maize	nucleus	31.08	26.17
Zm00001d035512_P001	Maize	nucleus	38.77	24.66
HORVU1Hr1G011800.4	Barley	nucleus	38.46	24.32
TraesCS1A01G058400.1	Wheat	nucleus	38.15	24.31
TraesCS1D01G059200.1	Wheat	nucleus	38.15	24.27
AT5G60120.2	Thale cress	nucleus	37.85	24.26
TraesCS1B01G076300.1	Wheat	nucleus	38.15	24.22
Os05t0121600-01	Rice	nucleus	37.23	23.63
AT2G41710.4	Thale cress	nucleus	21.54	15.25

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	EntrezGene:818510	ProteinID:AAC28983.1	ProteinID:AEC09650.1	InterPro:AP2-like_transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ArrayExpress:AT2G39250	EnsemblPlantsGene:AT2G39250	RefSeq:AT2G39250	TAIR:AT2G39250
RefSeq:AT2G39250-TAIR-G	EnsemblPlants:AT2G39250.1	TAIR:AT2G39250.1	EMBL:AY062578	EMBL:AY093386	EMBL:AY576276
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009873	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	RefSeq:NP_001325386.1	RefSeq:NP_850313.2	PFAM:PF00847	PO:PO:0000013	PO:PO:0000037
PO:PO:0000293	PO:PO:0001054	PO:PO:0007098	PO:PO:0007115	PO:PO:0007123	PO:PO:0008019
PO:PO:0009006	PO:PO:0009025	PO:PO:0009047	PO:PO:0020030	PO:PO:0020100	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	UniProt:Q6PV67	SMART:SM00380	Symbol:SNZ	SUPFAM:SSF54171
UniParc:UPI0000358770	SEG:seg	:	:	:	:

Description

SNZAP2-like ethylene-responsive transcription factor SNZ [Source:UniProtKB/Swiss-Prot;Acc:Q6PV67]

Coordinates

chr2:-:16388691..16391176

Molecular Weight (calculated)

36442.4 Da

IEP (calculated)

9.246

GRAVY (calculated)

-0.586

Length

325 amino acids

Sequence
(BLAST)

001: MLDLNLGILS THNEDEDCKV PTSIFIQEED SINPSNDNLS LITFGILKRN VEILPPPPPP PPPPPPSENE LSGPGNEWLD LSSMQRNKQE TLVMKKKSRR
101: GPRSRSSHYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YTAARAYDRA AIRFRGLQAD INFIVDDYKQ DIEKMKNLSK EEFVQSLRRA SASLARGGSK
201: YKNTHMRNDH IHLFQNRGLN AAAAKCNEIR KMEGDIKLGA HSKGNEHNDL ELSLGISSSS KVRILEPADY YMGLNRSVTS LHGKPLPGYL PITEIKPLKT
301: VVASSGFPFI TMINPSSLSL SCFDP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.