Factsheet for Zm00001d035512_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39250.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT2G39250.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT2G39250.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT2G39250.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010987_P001	Maize	nucleus	56.56	74.87
Os05t0121600-01	Rice	nucleus	57.34	57.23
Zm00001d034629_P001	Maize	nucleus	40.12	47.34
Solyc04g049800.2.1	Tomato	nucleus	36.01	46.23
PGSC0003DMT400031401	Potato	nucleus	36.59	45.95
Solyc11g072600.1.1	Tomato	nucleus	42.86	45.53
PGSC0003DMT400065313	Potato	nucleus	43.84	44.89
VIT_13s0019g03550.t01	Wine grape	nucleus	43.05	44.27
Bra007123.1-P	Field mustard	nucleus	29.16	43.44
CDY68119	Canola	nucleus	29.16	43.44
CDX73419	Canola	nucleus	29.16	43.31
AT3G54990.1	Thale cress	nucleus	29.16	43.06
CDY07510	Canola	nucleus	27.4	42.68
Zm00001d026448_P001	Maize	nucleus	34.25	42.37
KRH70384	Soybean	nucleus	32.09	39.42
Zm00001d046621_P001	Maize	nucleus	30.14	39.19
Bra020262.1-P	Field mustard	nucleus	32.88	39.16
AT2G39250.1	Thale cress	nucleus	24.66	38.77
KRH33335	Soybean	nucleus	31.31	38.74
Zm00001d002075_P001	Maize	nucleus	40.31	38.65
CDY09223	Canola	nucleus	32.49	38.52
Bra002510.1-P	Field mustard	nucleus	33.66	38.05
CDY31576	Canola	nucleus	33.66	38.05
CDX80199	Canola	nucleus	33.66	37.89
Zm00001d019230_P002	Maize	plastid	37.96	36.26
AT5G60120.2	Thale cress	nucleus	33.66	33.92
Zm00001d037511_P001	Maize	nucleus	11.74	30.3
Zm00001d024468_P003	Maize	nucleus	16.24	28.62
Zm00001d014670_P001	Maize	endoplasmic reticulum, golgi	9.0	24.6
Zm00001d018050_P003	Maize	nucleus	15.66	20.73
Zm00001d013170_P001	Maize	nucleus	16.63	17.78
Zm00001d038087_P003	Maize	mitochondrion	13.5	14.29

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A1D6LGX5	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:AQK79141.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0008444438	EnsemblPlantsGene:Zm00001d035512
EnsemblPlants:Zm00001d035512_P001	EnsemblPlants:Zm00001d035512_T001	SEG:seg	:	:	:

Description

AP2-EREBP-transcription factor 81Putative AP2/EREBP transcription factor superfamily protein

Coordinates

chr6:+:30481710..30486777

Molecular Weight (calculated)

55330.4 Da

IEP (calculated)

9.770

GRAVY (calculated)

-0.656

Length

511 amino acids

Sequence
(BLAST)

001: MELDLNVAEV APEKPSAALE ASDSGSSGSS VLNAEAASAG GGGPAPGEEG SSSTPAVLEF SILRSDSDAA GADADDGDAT PSPPRHHQQQ LVTRELFPAP
101: QHWAELGFFR AGPQQQPDIR VLPHPHPYPP PPPPAQPQQA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFNL SDYDDDMKQM KSLSKEEFVH ALRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKVE YRLDIRFSLP FRDPRAYDKA AIKCNGREAV
301: TNFEPSTYDG ELLLTAEASA EVADDVDLNL SISQPASSQS PKRDKNCLGP QLHHHHGRPF DGSAVLKKTK ASAKSMLRLS CRRRAALTGR SSLISWLPSI
401: YRLGLTPSSS HTMRLFMQCS MQPEGSDASR RDPSWAAAAA WKVTAAAPPP PTTTLLPLPL PSTSSAAASS GFSNTATTAA AAPSAASSRR FDPPPPSSSS
501: SSSHHHHHHR R

Best Arabidopsis Sequence Match ( AT2G28550.1 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAINTNGR EAVTNFEMSS YQNEINSESN
301: NSEIDLNLGI SLSTGNAPKQ NGRLFHFPSN TYETQRGVSL RIDNEYMGKP VNTPLPYGSS DHRLYWNGAC PSYNNPAEGR ATEKRSEAEG MMSNWGWQRP
401: GQTSAVRPQP PGPQPPPLFS VAAASSGFSH FRPQPPNDNA TRGYFYPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.