Factsheet for Bra007123.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68119	Canola	nucleus	100.0	100.0
AT3G54990.1	Thale cress	nucleus	84.55	83.81
Bra000487.1-P	Field mustard	nucleus	41.69	34.29
Bra012139.1-P	Field mustard	nucleus	35.57	33.89
Bra011741.1-P	Field mustard	nucleus	40.23	31.87
Bra011939.1-P	Field mustard	nucleus	41.69	31.5
Bra017809.1-P	Field mustard	nucleus	39.36	31.25
Bra020262.1-P	Field mustard	nucleus	38.78	31.0
VIT_13s0019g03550.t01	Wine grape	nucleus	44.9	30.99
Zm00001d010987_P001	Maize	nucleus	34.69	30.83
Bra002510.1-P	Field mustard	nucleus	39.94	30.31
OQU77289	Sorghum	nucleus	38.48	30.21
Zm00001d035512_P001	Maize	nucleus	43.44	29.16
TraesCS1B01G076300.1	Wheat	nucleus	43.44	29.1
TraesCS1D01G059200.1	Wheat	nucleus	43.15	28.96
TraesCS1A01G058400.1	Wheat	nucleus	42.86	28.82
HORVU1Hr1G011800.4	Barley	nucleus	42.86	28.6
Os05t0121600-01	Rice	nucleus	41.69	27.93
Bra004641.1-P	Field mustard	nucleus	23.03	19.08
Bra000237.1-P	Field mustard	nucleus	23.32	17.28

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra007123
EnsemblPlants:Bra007123.1	EnsemblPlants:Bra007123.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	InterPro:IPR001471	InterPro:IPR036955
UniProt:M4CSD1	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI00025429AC	SEG:seg	:	:	:

Description

AT3G54990 (E=5e-127) SMZ | SMZ (SCHLAFMUTZE); DNA binding / transcription factor

Coordinates

chrA09:-:27439796..27442932

Molecular Weight (calculated)

38183.9 Da

IEP (calculated)

9.879

GRAVY (calculated)

-0.611

Length

343 amino acids

Sequence
(BLAST)

001: MLDLSLGMFS NYGEDQDRKV PFVSTAGDEE SNISSSSSKD SAAGKDFITF GILKRDDDVV PPPPPSRETG DLFPVADARR NIEFSLDDGH WLRLSSLQRN
101: KQQVVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YAAARAYDRA AIKFRGLDAD INFVVEDYRQ DLDKMKNLNK VEFVQTLRRE
201: SASFGRGSSK YKGLTLQKCT QLKTHHDQIH LFQNRGWDAA AIKYNNELGK GGVMKSGASI KGNIHNDLEL SLGISSSSQN IKLTTSDYYK GNQSAMGLFG
301: KHSPIYLPVT TMNPLKTVAA SSGFPFITMT TSSSSSMSTS FDP

Best Arabidopsis Sequence Match ( AT3G54990.1 )
(BLAST)

001: MLDLNLKIFS SYNEDQDRKV PLMISTTGEE ESNSSSSSTT DSAARDAFIA FGILKRDDDL VPPPPPPPHK ETGDLFPVVA DARRNIEFSV EDSHWLNLSS
101: LQRNTQKMVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAYAAARA YDRAAIKFRG LDADINFVVD DYRHDIDKMK NLNKVEFVQT
201: LRRESASFGR GSSKYKGLAL QKCTQFKTHD QIHLFQNRGW DAAAIKYNEL GKGEGAMKFG AHIKGNGHND LELSLGISSS SESIKLTTGD YYKGINRSTM
301: GLYGKQSSIF LPMATMKPLK TVAASSGFPF ISMTSSSSSM SNCFDP

Arabidopsis Description

SMZAP2-like ethylene-responsive transcription factor SMZ [Source:UniProtKB/Swiss-Prot;Acc:Q6PV68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.