Factsheet for VIT_13s0019g03550.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0019g00340.t01
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39250.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT2G39250.1	VIT_13s0019g00340.t01	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g03590.t01	Wine grape	nucleus	52.52	52.2
Solyc04g049800.2.1	Tomato	nucleus	40.85	51.01
PGSC0003DMT400031401	Potato	nucleus	41.25	50.37
VIT_08s0040g03180.t01	Wine grape	nucleus	49.5	49.7
Zm00001d010987_P001	Maize	nucleus	38.23	49.22
PGSC0003DMT400065313	Potato	nucleus	47.69	47.49
OQU77289	Sorghum	nucleus	40.64	46.22
CDY07510	Canola	nucleus	30.38	46.04
Solyc11g072600.1.1	Tomato	nucleus	44.06	45.53
KRH70384	Soybean	nucleus	37.63	44.95
Bra007123.1-P	Field mustard	nucleus	30.99	44.9
CDY68119	Canola	nucleus	30.99	44.9
AT3G54990.1	Thale cress	nucleus	30.99	44.51
TraesCS1A01G058400.1	Wheat	nucleus	45.07	43.92
CDX73419	Canola	nucleus	30.38	43.9
TraesCS1D01G059200.1	Wheat	nucleus	45.07	43.84
TraesCS1B01G076300.1	Wheat	nucleus	45.07	43.75
Os05t0121600-01	Rice	nucleus	44.67	43.36
KRH33335	Soybean	nucleus	35.81	43.1
Zm00001d035512_P001	Maize	nucleus	44.27	43.05
HORVU1Hr1G011800.4	Barley	nucleus	44.47	43.0
VIT_07s0031g00220.t01	Wine grape	nucleus	43.26	42.41
CDX80199	Canola	nucleus	38.63	42.29
CDY31576	Canola	nucleus	38.03	41.81
Bra002510.1-P	Field mustard	nucleus	38.03	41.81
Bra020262.1-P	Field mustard	nucleus	34.81	40.33
AT2G39250.1	Thale cress	nucleus	26.36	40.31
CDY09223	Canola	nucleus	34.81	40.14
AT5G60120.2	Thale cress	nucleus	37.83	37.08
VIT_04s0023g00970.t01	Wine grape	nucleus	8.65	36.75
VIT_08s0007g08580.t01	Wine grape	nucleus	19.72	23.0

Protein Annotations

EntrezGene:100263240	wikigene:100263240	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CCB56226	ProteinID:CCB56226.1	InterPro:DNA-bd_dom_sf	UniProt:F6HNK7	EMBL:FN595998
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100263240	wikigene:LOC100263240	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF70	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC53718	UniParc:UPI0001984796
ArrayExpress:VIT_13s0019g03550	EnsemblPlantsGene:VIT_13s0019g03550	EnsemblPlants:VIT_13s0019g03550.t01	unigene:Vvi.4954	RefSeq:XP_002275627	RefSeq:XP_002275627.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:+:4720263..4723858

Molecular Weight (calculated)

54711.8 Da

IEP (calculated)

7.249

GRAVY (calculated)

-0.632

Length

497 amino acids

Sequence
(BLAST)

001: MWDLNVESGC DEDERMIVVV VEKGEEEELV PGGCRSLMED SGTSNSSVVN ADEAPSNGGD EDSSNNSSAF NFGILNKLGR HVPTYGAVEE TPEFVTRQLF
101: PATGDRGGGE SELCSGSSST SFPKPQWLNL SCPEPIGQQK PKQQQQQQQQ QVRKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA
201: ARAYDRAAIK FRGVDADINF SISDYEEDMK QMKNLNKEEF VHILRRQSNG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE IEAARAYDKA
301: AIRYNGREAV TNFVPSTYGE GAILEANDRS SGHNLDLNLG LSFPPDGPRG NDTVGRRSMV EGSTYTLVGG QPRHSLTTVS KHLPMISGIC TSFLPIHEET
401: ALEKRLDGVS SPRFSNWARQ VYGHGVNIPI PLLSTAASSG FPSCSTIGPS ATLPLLNPRN INPALQPPPQ ISPPTTSTTN STSCFYNFGS SNQQMQF

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.