Factsheet for VIT_08s0040g03180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	40.81	57.55
KRH67634	Soybean	nucleus	53.13	57.3
KRG95917	Soybean	mitochondrion	53.54	53.64
VIT_06s0004g03590.t01	Wine grape	nucleus	54.14	53.6
GSMUA_Achr8P01980_001	Banana	nucleus	39.19	52.43
GSMUA_Achr10P...	Banana	nucleus	46.06	51.58
GSMUA_Achr5P29290_001	Banana	nucleus	43.03	49.53
VIT_13s0019g03550.t01	Wine grape	nucleus	49.7	49.5
GSMUA_Achr9P03060_001	Banana	nucleus	43.03	49.19
GSMUA_Achr6P33140_001	Banana	nucleus	46.67	48.43
GSMUA_Achr11P...	Banana	nucleus	41.82	47.92
Solyc06g075510.2.1	Tomato	nucleus	45.25	47.26
PGSC0003DMT400016881	Potato	nucleus	23.84	46.09
GSMUA_Achr6P34420_001	Banana	nucleus	42.63	44.33
GSMUA_Achr5P07270_001	Banana	nucleus	43.23	43.94
GSMUA_Achr8P21030_001	Banana	nucleus	44.44	43.82
VIT_07s0031g00220.t01	Wine grape	nucleus	41.82	40.83
GSMUA_Achr9P04270_001	Banana	nucleus	37.78	39.7
VIT_04s0023g00970.t01	Wine grape	nucleus	8.69	36.75
VIT_08s0007g08580.t01	Wine grape	nucleus	18.99	22.07

Protein Annotations

EntrezGene:100244807	wikigene:100244807	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CBI32623	ProteinID:CBI32623.3	UniProt:D7TQA3	InterPro:DNA-bd_dom_sf	EMBL:FN596008
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100244807	wikigene:LOC100244807	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF28	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001983C5F	ArrayExpress:VIT_08s0040g03180
EnsemblPlantsGene:VIT_08s0040g03180	EnsemblPlants:VIT_08s0040g03180.t01	unigene:Vvi.14265	RefSeq:XP_002273339	RefSeq:XP_002273339.1	SEG:seg

Description

No Description!

Coordinates

chr8:-:14133347..14136582

Molecular Weight (calculated)

54338.6 Da

IEP (calculated)

6.406

GRAVY (calculated)

-0.620

Length

495 amino acids

Sequence
(BLAST)

001: MLDLNLNDVS DDSFHGSTQA VDPGKLLDLS SNQMEDSGSF NSSIVNADAL SSTTADDDSS SNHLDHCCGI VAFSFDFFKQ NEDHDNKSSD SVTRQFFPVT
101: SGGEGDCSLG SSLQHPCILQ VGSGGPLLPK KPQQQQQVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGA
201: DADINFAVSD YDEDIKQMSN FTKEEFVHVL RRGSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEIEAA RAYDKAAIKC NGREAVTNFE
301: PSTYEGEIIF PADNGGSSQN LNLLPNLDLH LGVAPYFSDE PMSDEPVRNS KANGSPSRQG HDAMPDDRGE RIENSTSATL GVHPSYGLVM ASDHPPSWSG
401: VNSRVFPIYK ERAIEKRIEV DHLPNWAWQN HGPYGGATPP LFSTAASSGF LSSVTTASPA NPTQGSLQST TVLQHYYSPS LTNTTSISPY YYCRS

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.