Factsheet for VIT_06s0004g03590.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	45.2	64.39
GSMUA_Achr10P...	Banana	nucleus	50.6	57.24
GSMUA_Achr8P01980_001	Banana	nucleus	42.2	57.03
VIT_08s0040g03180.t01	Wine grape	nucleus	53.6	54.14
GSMUA_Achr11P...	Banana	nucleus	46.4	53.7
GSMUA_Achr6P33140_001	Banana	nucleus	51.0	53.46
GSMUA_Achr9P03060_001	Banana	nucleus	46.2	53.35
GSMUA_Achr5P29290_001	Banana	nucleus	45.2	52.56
VIT_13s0019g03550.t01	Wine grape	nucleus	52.2	52.52
GSMUA_Achr8P21030_001	Banana	nucleus	51.2	51.0
GSMUA_Achr5P07270_001	Banana	nucleus	49.0	50.31
GSMUA_Achr6P34420_001	Banana	nucleus	46.4	48.74
VIT_07s0031g00220.t01	Wine grape	nucleus	44.8	44.18
GSMUA_Achr9P04270_001	Banana	nucleus	41.6	44.16
VIT_04s0023g00970.t01	Wine grape	nucleus	8.8	37.61
VIT_08s0007g08580.t01	Wine grape	nucleus	19.6	23.0

Protein Annotations

EntrezGene:100246815	wikigene:100246815	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CCB43630	ProteinID:CCB43630.1	InterPro:DNA-bd_dom_sf	UniProt:F6GTW6	EMBL:FN594951
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100246815	wikigene:LOC100246815	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC63962	UniParc:UPI000210A2F4
ArrayExpress:VIT_06s0004g03590	EnsemblPlantsGene:VIT_06s0004g03590	EnsemblPlants:VIT_06s0004g03590.t01	RefSeq:XP_002284749	RefSeq:XP_002284749.2	SEG:seg

Description

No Description!

Coordinates

chr6:-:4494335..4498190

Molecular Weight (calculated)

54252.6 Da

IEP (calculated)

6.457

GRAVY (calculated)

-0.643

Length

500 amino acids

Sequence
(BLAST)

001: MLDLNLNVGS SDSTQHGDSV VGSEKFPEGS GTQMDESGTS NSSIVNAEAS SNGGGDDDSC STRAGDAFSL NFDILKVGDC GSPNDVVTRQ LFPMSAGGGV
101: GGDSVFFQGQ SSSNWIDLSF NQSGTVGGQE VRVAQQHPQP QQQQQPVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD
201: RAAIKFRGVD ADINFNLSDY DEDLKQMKNL TKEEFVHILR RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEVEAAR AYDKAAIKCN
301: GREAVTNFEP STYEGEMIPE ASNEGSDHNL DLNLGISPPL SNGPKEIDGL GHLQFHSGSH DAHNGRRSMM ENPNIETAGD PSFKGLAMTS EHPPLWTGVY
401: PSFFPGYEER ATERRIEASS SQGLPNWGWQ MHGQVTATPM PLFSTAASSG FSSSATTAPS AAILSSKPPN TTSHSICFAS SASAVTHPSQ YYFQMKPPPP

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.