Factsheet for GSMUA_Achr5P29290_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03060_001	Banana	nucleus	64.42	63.97
GSMUA_Achr11P...	Banana	nucleus	62.09	61.81
GSMUA_Achr6P34420_001	Banana	nucleus	67.67	61.13
GSMUA_AchrUn_...	Banana	nucleus	45.81	56.13
GSMUA_Achr8P01980_001	Banana	nucleus	45.12	52.43
GSMUA_Achr10P...	Banana	nucleus	53.26	51.81
GSMUA_Achr4P06100_001	Banana	nucleus	39.3	49.71
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	40.23	47.79
KRG89074	Soybean	nucleus	49.53	47.54
GSMUA_Achr6P33140_001	Banana	nucleus	52.33	47.17
KRH67634	Soybean	nucleus	49.3	46.19
GSMUA_Achr1P26080_001	Banana	nucleus	39.77	45.6
VIT_06s0004g03590.t01	Wine grape	nucleus	52.56	45.2
KRH22956	Soybean	nucleus	49.77	44.96
KRH24963	Soybean	nucleus	51.4	44.83
GSMUA_Achr8P21030_001	Banana	nucleus	52.33	44.82
AT2G28550.3	Thale cress	nucleus	47.91	44.4
PGSC0003DMT400071732	Potato	nucleus	46.98	44.2
GSMUA_Achr5P07270_001	Banana	nucleus	50.0	44.15
PGSC0003DMT400028706	Potato	nucleus	45.58	44.04
KRH10362	Soybean	nucleus	49.53	43.92
GSMUA_Achr9P22540_001	Banana	nucleus	36.98	43.8
KRG95917	Soybean	mitochondrion	50.0	43.52
CDY15760	Canola	nucleus	45.81	43.39
CDY04573	Canola	nucleus	45.58	43.17
Bra011939.1-P	Field mustard	nucleus	45.58	43.17
VIT_08s0040g03180.t01	Wine grape	nucleus	49.53	43.03
Solyc06g075510.2.1	Tomato	nucleus	47.21	42.83
Solyc10g084340.1.1	Tomato	nucleus	45.81	42.64
GSMUA_Achr4P12860_001	Banana	nucleus	39.3	42.57
CDX95767	Canola	nucleus	41.16	42.45
PGSC0003DMT400016881	Potato	nucleus	25.12	42.19
Solyc09g007260.2.1	Tomato	nucleus	44.42	41.98
Bra000487.1-P	Field mustard	nucleus	40.0	41.25
GSMUA_Achr3P28340_001	Banana	nucleus	42.09	41.14
CDX83296	Canola	nucleus	41.4	40.83
GSMUA_AchrUn_...	Banana	nucleus	40.7	39.77
GSMUA_Achr9P04270_001	Banana	nucleus	43.26	39.49
GSMUA_Achr1P09830_001	Banana	nucleus	40.7	38.29
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	14.42	37.58
GSMUA_Achr3P13180_001	Banana	nucleus	44.19	37.4
GSMUA_Achr6P02730_001	Banana	nucleus	14.19	36.97
GSMUA_Achr7P16540_001	Banana	mitochondrion	17.21	26.91
GSMUA_Achr6P30870_001	Banana	nucleus	15.58	22.71
GSMUA_AchrUn_...	Banana	nucleus	16.74	20.93

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G29290_001
EnsemblPlants:GSMUA_Achr5P29290_001	EnsemblPlants:GSMUA_Achr5T29290_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0T2Q3	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000295CFD4	SEG:seg	:	:	:	:

Description

AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G29290_001]

Coordinates

chr5:-:29089980..29093904

Molecular Weight (calculated)

47609.5 Da

IEP (calculated)

7.386

GRAVY (calculated)

-0.549

Length

430 amino acids

Sequence
(BLAST)

001: MEFDLNVAYP GDSLAAAPYS FESSSNDIAT AAAGDEDARS SNGAASVFCS DVLGRPAEPV VDEEEGCVSP EPGMATRQLF PLAAEVAAMQ PHVAPEANLV
101: LQRRQQQRQQ VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGLDADINFN LSDYDEDLKQ LRNLTKEEFV
201: HILRRQSTGF ARGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEI EAARAHDKAA IKFNGREAIT NFEPSIYEGE ISLAPENEVA FEDVDLNLRI
301: SQPNLHYPKR DGNSGGTNFS CHSFEAMETG NSQAESLNYL NVGPRLAMAP QHPHSWASSC PSFFFSIERN HPKAEVRPRQ PLPIPIRAWQ ISPTPLQSVS
401: SAASSGFSTA TTMAAASQHP SLPFSSIRNH

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.