Factsheet for Solyc09g007260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071732	Potato	nucleus	92.97	92.56
GSMUA_AchrUn_...	Banana	nucleus	42.2	54.7
Solyc10g084340.1.1	Tomato	nucleus	53.85	53.03
KRG89074	Soybean	nucleus	50.77	51.56
GSMUA_Achr8P01980_001	Banana	nucleus	40.66	50.0
KRH22956	Soybean	nucleus	50.77	48.53
KRH24963	Soybean	nucleus	51.87	47.87
CDX95767	Canola	nucleus	43.74	47.72
Bra000487.1-P	Field mustard	nucleus	43.08	47.0
GSMUA_Achr10P...	Banana	nucleus	45.49	46.83
CDY04573	Canola	nucleus	46.59	46.7
Bra011939.1-P	Field mustard	nucleus	46.59	46.7
Solyc04g049800.2.1	Tomato	nucleus	40.66	46.48
GSMUA_Achr9P03060_001	Banana	nucleus	44.18	46.42
KRH10362	Soybean	nucleus	49.23	46.19
CDY15760	Canola	nucleus	45.93	46.04
GSMUA_Achr11P...	Banana	nucleus	43.3	45.6
Solyc11g072600.1.1	Tomato	nucleus	48.13	45.53
CDX83296	Canola	nucleus	43.3	45.18
AT2G28550.3	Thale cress	nucleus	45.93	45.04
Solyc03g044300.2.1	Tomato	nucleus	39.56	44.89
GSMUA_Achr5P29290_001	Banana	nucleus	41.98	44.42
GSMUA_Achr6P33140_001	Banana	nucleus	44.84	42.77
GSMUA_Achr5P07270_001	Banana	nucleus	44.84	41.89
GSMUA_Achr8P21030_001	Banana	nucleus	45.93	41.63
GSMUA_Achr6P34420_001	Banana	nucleus	42.64	40.76
Solyc06g075510.2.1	Tomato	nucleus	42.42	40.72
Solyc02g093150.2.1	Tomato	nucleus	38.24	39.01
GSMUA_Achr9P04270_001	Banana	nucleus	39.56	38.22
Solyc02g064960.2.1	Tomato	nucleus	41.1	37.1
Solyc02g030200.1.1	Tomato	nucleus	4.18	33.33
Solyc02g030210.2.1	Tomato	nucleus	17.8	23.08
Solyc03g123430.2.1	Tomato	nucleus	20.88	18.52

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K4CQB6	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46
SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc09g007260.2	EnsemblPlants:Solyc09g007260.2.1	UniParc:UPI000276B711	SEG:seg

Description

No Description!

Coordinates

chr9:+:856629..859952

Molecular Weight (calculated)

49936.3 Da

IEP (calculated)

7.078

GRAVY (calculated)

-0.528

Length

455 amino acids

Sequence
(BLAST)

001: MFDLNLCFEE DAMETVTTSG KLKELSFGQI ENSGTSNSSI VNVETSSTAG DDEFISCSDQ RTDGYAFEIL RADYEVNGFV TKELFPLTGG ESAATPSQQQ
101: QQWLDLSGNY GGVPMEQRIV IGPPQLRQQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GLDADINFNV
201: SDYHDDLKQM GNFSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAIKCNGK EAVTNFELST YEGELSTEAE NGGADHNLDL
301: NLGIAPSVLA DDQGGNTCQM VNYVVQCASN GLPGYTGAMN IPTTTMGGKL LHGHQLLTDR PLLWNGVNTS IFPTLKGTSL GKGIEVDSLP NWTRQDQHPY
401: GGSPSVPLFS TAASSGFANS TTAAAQLPRF STGKLPYQHS PSLANMNFAH YYCKS

Best Arabidopsis Sequence Match ( AT2G28550.1 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAINTNGR EAVTNFEMSS YQNEINSESN
301: NSEIDLNLGI SLSTGNAPKQ NGRLFHFPSN TYETQRGVSL RIDNEYMGKP VNTPLPYGSS DHRLYWNGAC PSYNNPAEGR ATEKRSEAEG MMSNWGWQRP
401: GQTSAVRPQP PGPQPPPLFS VAAASSGFSH FRPQPPNDNA TRGYFYPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.